Cololabis saira (Pacific saury): 133428918
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Entry
133428918 CDS
T09849
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133428918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csai03021
]
133428918
03036 Chromosome and associated proteins [BR:
csai03036
]
133428918
Transcription machinery [BR:
csai03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133428918
Chromosome and associated proteins [BR:
csai03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
133428918
Chromatin remodeling factors
BAF complex
133428918
PBAF complex
133428918
GBAF(ncBAF) complex
133428918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
Bromodomain
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
133428918
NCBI-ProteinID:
XP_061572577
LinkDB
All DBs
Position
1:complement(18472500..18505746)
Genome browser
AA seq
1716 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGAMMGPSPGPGPSPGSSHSMMGPSPGPPSSGHPQPG
PSGYGPESMHPLHKPMESMHEKNLPEDRSFSQMKGLSMRQGGHSGMGPPPSPLDQHSQGY
HSPLGGSDHSSPVASNGPPSGPLMAPSSSSSSAGPGSASAPLDGSGGDQHTLAANNRPGP
PAGSGPGPSPGPSLGSGVPGLGSGLDTGGPAGPGGPGAPGGPSAPTPFNQNQLHQLRAQI
MAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQQPMPSLVPGAGGGPGGGPAGPGPGPMGS
GYSRAHGMMGPNMPPPGPSGTPVGMQGPNPNGPPKSWPEGPMVNAAAPSNAPQKLIPPQP
TGRPSPAPPSVPPAASPVMPPQTQSPGQPAQPTPMMPYHAKQNRITPIQKPCGLDPVEIL
QEREYRLQARITHRIAELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRRD
TALETALDAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFK
EYHRSITGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKD
KRLAYLLQQTDEYVANLTELVRAHKAAQALKEKKKKKKKKKKLENAEGQAPVLGPDGEPL
DETSQMSDLPVKVIHVDSGNILTGVDAPKAGQLETWLEMNPGYEVAPRSDSEDSEEEEEE
EEEEEEPQPSSAPVEEKKKIADPDCEDVSEVDVRCIIENAKQDVDDEYSGAAFARGLQSY
YSVAHAVTERVDKQSTLLINGQLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIA
LITYLMENKRLNGPYLIIVPLSTLSNWVYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSG
KFNVLLTTYEYIIKDKQVLAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRRVLLTG
TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV
LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSSLQRVLYRHMQAKGVLLTDGSEKDKKGKGG
TKTLMNTIMQLRKICNHPYMFQQIEESFSEHLGFSGGIVQGADLYRASGKFEVLDRILPK
LRATNHKVLLFCQMTTLMTIMEDYFAYRSFKYLRLDGTTKAEDRGMLLKTFNDPGCEYFI
FLLSTRAGGLGLNLQSADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE
EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQ
MIARSEEEFEQFMRMDLDRRREEARNPRRKPRLMEEDELPTWIMKDDAEVERLTCEEEEE
KMFGRGSRQRKEVDYSDSLTEKQWLKVVFKKRPTKKIPEYKLLVKQRFAESGDSPSFWGL
DACVSISRLVRSPLPQAIEEGTLEEMEEEVRHKKTTRKRKRDRDLDLPGPSSSCGSRGRG
DKDDDGKRQRKRGRPPAEKLSPNPPPLTKKMKKIVDAVIKYKDSASGRQLSEVFIQLPSR
KELPEYYELIRKPVDFRKIKERIRSHRYRSLGDLERDVMLLFQNAQTFNLEGSLIYEDSI
VLQSVFTSLRQKIEKEEESEGEESEEEEEEQEEGSESETRSVKVKIRLSRKDKAGDRGKG
RSRRTGRTRAKPVVSDDDSEDEPEEERSPSGTDEES
NT seq
5151 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccagatcctcccatggggggcacccctcgccccggcccgtccccgggtcct
ggtccttctcctggagccatgatgggccccagccccgggcccgggccgtctcccggctcc
tctcacagcatgatgggccccagccccggtcccccctcctccggacacccccagccgggg
ccctctggatacggcccggaaagcatgcaccctctgcacaaacctatggagagcatgcat
gaaaaaaacctgcccgaggacagaagcttcagccagatgaagggtctgtctatgagacag
ggcggccacagcggcatgggcccgccgcccagccctctggaccaacactcacaaggctac
cactctccgttaggcggatccgatcactccagccccgttgcttcgaacggacccccctct
gggccgctcatggcgccatcatcctcctcctcctccgccggtcccggctccgcttcagcc
cccttagacggctccggtggagatcagcacaccctggctgctaataaccggcccgggccc
cctgccggttctggcccaggccccagccccggacccagtctcggctccggcgtccccggc
ctcggttcgggactcgacaccggcggccccgctggtcctggaggtcccggagcccctgga
ggcccgagtgctccgactcccttcaatcagaaccagctccaccagctcagagcgcagatc
atggcgtataagatgctggcccgcgggcagccgctgccggaccacctccagatggccgtc
cagggaaagaggcccatgccggggatgcagcagcagcagcccatgcctagtctggttccc
ggagccgggggagggccgggaggcggcccggcaggaccgggaccagggccgatgggctcg
ggctacagtcgagctcacgggatgatgggtcccaacatgcctcctccgggaccatcaggg
actccggttgggatgcaaggacccaaccccaacggaccacccaagtcctggcctgaaggc
cccatggtgaacgcagcagcgccctccaacgcacctcagaagttgatcccccctcaaccg
accggccggccgtccccggctcccccctcggttcccccggccgcctccccggtgatgccc
ccgcagacccagtcccccggtcagccggcccagcccacccccatgatgccgtaccacgcc
aagcagaaccgcatcacccccatccagaagccctgcggcctggacccggtggagatcctc
caggagagggagtacaggttacaggcacggatcactcatcgcatcgctgaactggagaac
ctgcccggttccctcgccggcgacctacgaaccaaagctaccatcgagctgaaagcactg
cggctgctgaacttccagagacagctgcgccaggaggtggtggtgtgcatgcgacgcgac
acggccctggagacggccctggacgccaaggcctacaagcggagcaagcggcagtcgctg
cgggaggctcgcatcacggagaaactggagaagcagcagaagattgagcaggagcgcaaa
cgcagacagaaacatcaggagtacctcaacagcatcctccagcacgccaaagacttcaag
gagtaccaccgatccatcacgggcaaaatccagaagctgaccaaagccgtggccacctac
cacgccaacaccgagcgcgagcagaagaaggagaatgaacgcattgagaaggagaggatg
agaaggctcatggctgaggatgaggagggctaccgtaaactgatcgaccagaagaaggac
aagcggctggcctacctgctgcagcagaccgacgagtacgtggccaacctcacggagctg
gtccgagcccacaaggcggcgcaggccctcaaggagaagaaaaagaagaagaagaagaaa
aagaagttggagaacgccgagggtcaggctcccgtcttaggacccgacggagagcctctg
gacgagacgagtcagatgagcgacctgccggtgaaggtcatccacgtggacagcgggaac
atcctcacaggcgtggacgcccccaaggcggggcagctggagacctggctggagatgaac
cccggctacgaggtggctccccgctcggacagtgaagacagcgaggaggaggaagaggag
gaggaagaagaagaggagcctcagccgtcatcagctccagtggaggaaaagaagaagatt
gcagaccctgactgtgaggacgtgtctgaggtggacgtccgatgcatcatcgagaacgcc
aaacaggacgtggacgacgagtacagtggcgcagcgtttgctcgaggactgcagtcttac
tattctgtggctcacgcagtcacggagagggtggacaagcagtcgactctgctgataaac
gggcagcttaagcagtatcagattaaaggtctggagtggttggtttctctgtacaacaac
aatctgaacgggatcctggccgatgagatgggtttggggaaaaccatccagaccatcgcc
ctcatcacatacctcatggagaacaagcggctcaacggaccctacctcatcatcgtacct
ctctcaactctctccaactgggtgtacgagtttgacaagtgggcgccgtcagttgtcaaa
gtgtcttacaaggggtctcctgctgctagaagagccttcgtcccgcagcttcgcagcggc
aagtttaacgttttactcaccacttacgagtacatcatcaaggacaaacaagtgttggcc
aagatccgctggaagtacatgatagtggacgaaggccaccgcatgaagaaccaccactgt
aagctgacccaggtcctgaacacgcactacctggcgccgcggcgggtcctgctgaccggg
actccgctccagaacaagctacccgagctctgggcgcttctcaacttcctgctgcccacc
attttcaagagctgcagcaccttcgagcagtggttcaacgcccccttcgccatgaccgga
gagaaggtggacctgaacgaagaggagacgattttgattatccggcgtcttcacaaagtg
ctacgccccttcctgcttcggagattaaagaaagaggtggaggcgcagcttccagaaaag
gtggagtacgtgatcaagtgtgacatgtcgtctcttcagagggtcctgtacagacacatg
caggctaaaggcgtgctgctcaccgacggctccgagaaagacaagaagggtaaaggaggc
acaaagacgctgatgaacaccatcatgcagctgaggaagatctgcaaccatccttacatg
ttccagcaaatcgaggagtccttctctgaacatctaggattctccggcggtatagtccag
ggtgccgacctgtatcgagcatcgggaaagtttgaggtgttggatcgaatcctgccaaag
ctgcgagccacgaaccacaaagtgctgcttttctgccagatgactacgctcatgaccatc
atggaggactacttcgcttacaggagcttcaaatatctgcgcctggatggcaccacgaag
gccgaggacagagggatgctgctgaagacgttcaacgacccggggtgcgagtacttcatc
tttctgctgagcacgagagccggaggcctcggcctcaacctgcagtcggccgacaccgtc
gtcatttttgactccgactggaacccgcatcaggacctgcaggctcaggaccgagcccac
cgcatcggccagcaaaacgaggtgagagtgttgcgtctctgcaccgtcaacagcgtggag
gagaaaatcctggcagcggccaaatataaactgaacgtggaccagaaggtcatccaggct
ggcatgtttgaccagaagtcctccagccacgaacgcagagccttcctgcaggccatcctg
gagcacgaggagcaagatgaggaggaggacgaggtgccggacgacgagacagtcaaccag
atgatcgccaggagtgaagaggagtttgagcagtttatgcgcatggacctggacaggcgc
cgggaggaggcccgcaacccccggcggaaacctcgcctgatggaggaggacgagctcccc
acctggatcatgaaggacgacgccgaggtggagcggctgacctgcgaggaggaggaggag
aagatgtttggacgaggttcgcggcagcggaaagaggtggactacagcgattcgctgacc
gagaagcagtggctcaaggttgtttttaaaaaaaggcccacgaaaaagatcccagaatat
aaactgcttgtaaaacaacgcttcgcagagtcgggagatagtccctcgttctggggtttg
gacgcgtgcgtttccatctcacgccttgtccggtctcccctcccgcaggccatcgaggaa
ggcacgctggaggagatggaggaggaggtccggcacaagaagacgacgcgtaagaggaag
cgggatcgggacctggacctgccgggcccctcctcgtcctgcgggagccgcgggcgggga
gacaaggacgacgacgggaagcggcagaggaagcggggacgaccgccggccgagaagctc
tccccgaacccgccgcccctcaccaagaagatgaagaagatagtggacgccgtcatcaag
tacaaagacagtgccagcggccgccagctgagtgaggtcttcatccagcttccgtctcgg
aaagagctgccggagtactacgagctgatccgcaagccggtggacttcaggaagatcaag
gagaggatccggagccatcgctaccgcagcctgggggatctggagagagacgtcatgctg
ctcttccagaacgcccagaccttcaacctggagggttcgctgatatatgaagactccatc
gtgctccagtcggtgttcaccagtttgaggcagaagattgaaaaagaggaggaaagtgag
ggagaggagagtgaagaagaagaggaggagcaagaggaaggatcagagtctgaaacgcgc
tcggtcaaagtgaagatccgtctgagcaggaaagataaagccggagaccgagggaagggc
cggagcagacggacgggacgcaccagagccaaacccgtggtcagcgacgacgactcggag
gacgagccagaagaggagcgctcaccgagtggcactgatgaggagtcgtag
DBGET
integrated database retrieval system
