Cololabis saira (Pacific saury): 133433294
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Entry
133433294 CDS
T09849
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133433294 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133433294 (cnot3a)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133433294 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133433294 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5646
DUF4407
Motif
Other DBs
NCBI-GeneID:
133433294
NCBI-ProteinID:
XP_061572944
LinkDB
All DBs
Position
3:27579877..27593546
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AA seq
910 aa
AA seq
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MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKFSAFQLHNAANANQKEKYEADLKKEIKKL
QRLRDQIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVD
PAQREKEETGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIDELKRLIER
HRFHIRMLETILRMLDNDSVPVDAIQKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDIP
AALVATSPSGQGNLEDEMYLHSSSTPTSTTSSSPIPPSPATCTAENSEDDKKRGRSTDSE
VSQSPVKNGTPSLLSSFSSSTTSGSSSSSSLVSMASVVGGIPAVPTSSSLIGSFSSAVQQ
HQQHQSVQQQQQPQPSNPLQQPPHTKPSVPSNTPPSPPSNPLLPTSTAPSLPAPSAPSLS
ALNSQPISVQTSVSSLGLGLGLDIRKGGLTGTSSANQMPSLGLGGHPTPLNTMAGLISGS
TPAPYAQAAASGGLGLSSTTQSSILVESSTSIPTSGSSGVTTNGAGTGLGLLGSSPAHTS
LSGSILSLVPGQNVVTGASQVPPSSASSTPGVVGMMGGNGGNGVVGVGVNAAPARPPSGL
KQNGSTSYSAVVAESSTESALSTPSQSQSSQPSSLSSSASQPMDNGPSLISSITLPPSSP
SPSFSDSTPGGGSLLNGPHSYTQATEGLKAPEPLITLKAMAERAAMVSGLDGEIPNLHLT
DRGRNDIFSGSSAAPGTPATPQPSVSEVSIPPSLGVCPLGPTPLPKDQLYQQAMQESAWT
HMPHPSDSERIRQYLMRNPCPTLPYHHQVPPHHSDSIEFYQRLSTETLFFIFYYLEGTKA
QYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFE
YRYLEDRDLQ
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaaaagaaaacttcaaggtgagatcgatagatgtttgaaaaaagtagccgaa
ggtgtggaacagttcgaagacatttggcaaaagttttctgcatttcagcttcacaatgca
gccaatgcaaaccagaaggaaaaatatgaggctgacctcaaaaaagagattaaaaaacta
cagcgattgagagatcagataaaaacatgggtggcctccaacgagatcaaagacaaaagg
cagctagttgagaaccgcaaacttatagagacgcaaatggagcggttcaaagtggtggaa
cgtgaaacaaaaacaaaagcctactctaaagaaggcttaggacttgctcagaaagtggat
ccagctcagagagaaaaggaggaaacgggacagtggctaacgaacacaatagacactcta
aatatgcaggtggatcagtttgagagtgaggtggaatctctttctgtccaaacgcgaaag
aagaagggtgacaaagacaagcaagatcgtattgatgagctcaagcggttgattgagaga
catagattccacattcgcatgttggagacaattttacgaatgttggacaatgactctgtg
cccgtggatgcaattcaaaagatcaaggatgacgttgagtactacattgattcttctcaa
gacccggactttgaggagaatgaattcttgtatgatgacttggacctagaagacatccct
gcagcgttagttgcaacttctccatcaggtcagggcaatttggaagatgagatgtatctc
cactctagcagcactcccacctccacaacctcttcttcacccatacctccatccccggcc
acttgtacagctgagaactcggaggacgataagaaaaggggacggtcgacagacagtgaa
gttagtcagtcacctgtgaagaacggcaccccatccttgttatcttctttctcttcttct
accacctcggggtcgtcttcatcttcctccctcgtgtcgatggcgagtgtcgttggaggc
attcccgcagttcccacgagcagcagtcttataggaagcttcagcagcgcagtgcaacaa
catcagcagcatcaatctgtacaacagcagcaacaacctcagccatcaaacccgttgcag
cagccacctcacacaaaaccctctgtcccgtcaaacaccccccccagtcctcccagcaac
ccgcttctcccaacatccactgcgccctctctccctgctcccagtgcacccagtttatca
gccctcaactctcagcccatatctgtacaaacctcggtatccagtttgggacttggactg
ggactggatataaggaaaggtggcctgacggggaccagcagtgccaaccaaatgccaagt
ttaggcttgggtggccatcccactcctttaaacaccatggcggggctcatttcagggtcc
acacctgctccttatgcccaggcagcagcatcgggaggcttgggtctgagcagcaccact
cagtccagcattttagtggagagcagcacttccatccccacctctggctccagtggagtc
accaccaacggggccgggacagggctcggtttgctcggttccagcccagcccacacctca
ctaagtgggagtattttgagtctagtccctgggcagaatgtggttactggtgcctctcag
gtgcccccaagttctgctagcagcacccctggagtcgttggcatgatgggaggcaatgga
ggaaatggtgtggtaggagtaggagtgaatgccgctcctgctagaccaccaagtggactg
aaacaaaatggaagcacaagttacagtgccgtagtggcggagagctccacagaatcagcc
ctaagcacaccgagccagtcacaaagcagccaaccctcatcactcagctcttcagccagt
cagccgatggacaatggccccagcttaatcagctccatcacattgccccccagctctccg
tccccctcgttctcagacagcacacctggtggtgggagtcttctcaacgggccccattct
tacacacaggccacggagggcctcaaggctccggagcctctcatcactctgaaggcgatg
gctgagagagcagcaatggtatctggtctggacggagagattcccaacctgcatctaacc
gacagaggtcgtaatgatattttctctggttcatcggcagcgcctggcacacccgccacc
cctcagccgtccgtgtcagaggtcagcatcccaccctcactcggggtctgtccattgggc
ccaacccctctcccgaaagaccagctttaccagcaggcaatgcaagagtctgcatggaca
cacatgccacacccctccgactctgagaggatcaggcaatacctgatgaggaatccctgc
cccacgttgccctaccaccatcaggtaccgccacatcactctgactccatagagttctac
cagagactgtccacagaaactctcttcttcatcttctactacctggagggaaccaaggct
cagtatctgtctgcaaaggcgctaaaaaagcagtcgtggaggtttcacaccaagtacatg
atgtggttccagaggcacgaggagcccaagactatcactgatgagtttgaacagggcact
tacatttactttgactacgagaaatggggccagaggaagaaggaggggttcacctttgag
tacaggtacctggaagaccgagacctgcagtga
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