Cololabis saira (Pacific saury): 133435516
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Entry
133435516 CDS
T09849
Symbol
vars1
Name
(RefSeq) valine--tRNA ligase
KO
K01873
valyl-tRNA synthetase [EC:
6.1.1.9
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
133435516 (vars1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
csai01007
]
133435516 (vars1)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
csai03016
]
133435516 (vars1)
Enzymes [BR:
csai01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.9 valine---tRNA ligase
133435516 (vars1)
Amino acid related enzymes [BR:
csai01007
]
Aminoacyl-tRNA synthetase
Class I (U)
133435516 (vars1)
Transfer RNA biogenesis [BR:
csai03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
133435516 (vars1)
Prokaryotic type
133435516 (vars1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1
Anticodon_1
GST_C
tRNA-synt_1g
tRNA-synt_1_2
Val_tRNA-synt_C
Arc1p_N_like
GST_C_2
tRNA-synt_1e
Jag_N
GST_C_3
Motif
Other DBs
NCBI-GeneID:
133435516
NCBI-ProteinID:
XP_061573124
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All DBs
Position
3:29363333..29378976
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AA seq
1276 aa
AA seq
DB search
MATLYVSPHPDDFRSLLALIAAEFCPSSRPRIIKEDPPASLKARSRPALALVAGGADSVL
SGSSAVSWYLACQAKRTGVDTKQQSQVWQWLSFAENELIPVSCAVVFPLMGVMGVDKKLQ
QSSRSELMRVLKVLDQTLTLRTFLVGEGITLADMAVATAVLLPFKYALESTDKKALVNVT
RWFTTCINQPQFLKVLGEIGLCEKVAPVTPKANVVGDAKTADVSPVVDSAEPTNNGPPKT
EAQLKKEAKKREKLEKFQQKKDMEAKKKAQPPTEKKAKPEKKELGVIAYNIPTTAGERKD
VASPLPDSYSPQYVEAAWYPWWEKQGFFKPEYGRNLSEPNPRGTFMMCIPPPNVTGSLHL
GHALTNAIQDSLTRWHRMRGETSLWNPGCDHAGIATQVVVEKKLMRERGLSRHDLGRENF
IQEVWRWKNEKGDRIYHQLKKLGSSLDWDRACFTMDPKLSYAVQEAFIRMHDEGVIYRSK
RLVNWSCTLNSAISDIEVDKKELTGRTLLPVPGYKEKVEFGVLVSFSYKVDGSDEEVIVA
TTRIETMLGDSAVAVHPADPRYQHLKGKMVLHPFCDRKMPVVFDDFVDMSFGTGAVKITP
AHDHNDYEVGERHNLAFINILDENGLLINVPPPFLGMKRFEARKSVLQALKDRGQFKEIK
DNPMVVPVCSRSKDIVEPLLKPQWYVNCRDMGKQAADAVREGRLKIIPDHHLKTWFNWLD
NIRDWCISRQLWWGHRIPAYFITVNDPSVKPGEDMDGHYWVSGRSEEEAREKAAKRFNVS
PDKITLRQDEDVLDTWFSSGIFPFSIFGWPNETQDLNVFYPGTLLETGHDILFFWVARMV
MMGLKLTGKLPFKEVYLHAVVRDAHGRKMSKSLGNVIDPLDVITGISLEGLHAQLIDSNL
DPVEVEKAKQGQKSDYPNGIPECGTDALRFALCAYTSQGRDINLDVNRILGYRHFCNKLW
NAVKFAMRTLGDKFAPSEKAQLSGEESVSDRWILSRLCAAVALCNAGFKAYDFPAITTAI
YNFWLYELCDVYLESIKPVFSKSEEEGACQRLALVCRQTLYTCLEVGLRLLSPVMPFVSE
ELYQRLPRRQPQSDPPSICVTSYPDTQEFCWQSDEVDHDMEFIMAVVKTIRSLRADYNLT
KTRADCYLQCRDSATVSLVQKYNLQIQTLSYSQAVIPLTANQLVPEGCAVAIASDRCTVN
LMLKGLIDMEKEVTKLMTKKGDLEKQMEKLSEKMAKSDYKEKVPVKVQEQDAEKLRQSQA
EHEKVKEAIDNFRKMM
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atggccacgctctatgtgtcccctcaccctgatgacttcaggagtctcctggctctcata
gctgcagagttttgtccgtcgtcccgcccacggatcatcaaagaggacccgcctgcatcc
ctgaaagcccgctcaaggccagctttagcgctggttgctgggggcgccgactccgtcctg
agtgggagtagtgctgtgtcttggtacttggcctgtcaggcaaagaggactggtgtcgat
acaaagcagcagagccaggtgtggcagtggctcagctttgcagagaatgagctcatccca
gtgtcttgtgctgtggtcttccctttaatgggggtgatgggagttgataaaaagctgcaa
cagagttcccggtcagagctgatgcgtgtgctaaaggttcttgatcagacgcttacactg
agaacgttcttggtgggagaaggcattaccctggcggacatggctgtggctacagctgtt
ctcctacctttcaaatacgcattagagtcaacagacaagaaggcacttgtcaatgttacc
agatggttcacaacctgcatcaatcagccgcagttcttgaaggtgctgggggaaatcggt
ctttgtgagaaggtggcacccgtaacaccgaaggcaaatgttgttggagatgctaaaacg
gctgatgtcagtccggttgtggactctgcagaacccacaaataacggtccaccaaagacg
gaggcacagctgaaaaaggaagcaaagaagagagaaaagctggaaaaatttcaacagaaa
aaggacatggaggcaaagaaaaaggcacaaccacctacagagaaaaaggccaaacctgaa
aagaaggagctgggggttattgcatacaacatccctacaaccgctggagagagaaaagat
gttgccagtccacttcctgactcctacagtcctcagtatgtggaggctgcctggtatcca
tggtgggagaagcagggcttcttcaaacccgagtatggaaggaatcttagtgagccgaac
ccccgtggcaccttcatgatgtgcatcccccctcccaatgtgaccggatcacttcatctg
ggtcacgccctcaccaacgccatccaggacagtctcactagatggcacaggatgcgaggg
gagacctccctgtggaacccaggctgtgaccacgctggcattgccacccaggtggtggtg
gagaaaaagttgatgagagagagaggtttgagtcgtcacgatctgggcagggaaaacttc
atccaggaagtctggagatggaagaatgagaagggagaccgcatttaccatcagctgaag
aagctgggatcctctctggactgggacagagcctgcttcactatggaccctaaactgtcc
tatgcagtccaggaagcatttatccgcatgcatgatgagggagtcatttataggagcaag
aggctggtcaactggtcctgcacactaaactctgccatctctgatatagaggtggataaa
aaggagctcactggcaggactctgctgcccgtgcccggttacaaggagaaagtagagttt
ggagtcttggtgtctttttcctacaaggtggatggatcagatgaggaggtgattgtggcc
acaactcgtatcgagactatgctgggagactctgccgtagccgtccaccccgctgaccca
agatatcagcatcttaagggaaagatggttctgcatcccttctgcgacagaaagatgcca
gtagtctttgatgattttgtggacatgagctttggaacaggtgctgtcaaaatcacccca
gcccatgaccataatgattacgaggtcggagaaaggcacaatttggccttcattaacatc
ttggatgagaatggcctgctcattaatgtgcctcctcccttcctgggcatgaaacgtttc
gaggcgagaaaatcagtccttcaggccctcaaggacagaggccagtttaaagagatcaaa
gacaaccccatggttgtcccagtttgcagtcgttccaaagacatcgtggagccgctgctg
aagccccagtggtatgtgaactgcagagatatgggcaagcaggctgcagacgccgtcaga
gagggcaggcttaaaatcatccccgatcatcacctcaagacgtggttcaactggctggac
aacattcgagactggtgcatctctcgacagctgtggtggggtcaccgtattcctgcttac
ttcatcaccgtcaatgatccgtctgtaaaaccaggagaggacatggatggtcattactgg
gtgagtgggagatcagaggaggaggccagagagaaggcagcgaaacgcttcaatgtgtct
cctgataaaataacactcagacaggacgaggacgttctggacacttggttctcatcaggc
attttccccttctctatatttggatggcctaatgagacccaagacctgaacgtgttctac
cctggtactttgctggagacgggccatgacatcctgttcttctgggttgcccgtatggtc
atgatgggcctcaaacttacaggcaagctgccctttaaagaggtttatctccatgcagtg
gtgcgggatgctcacggaaggaagatgagcaaatctctgggcaatgtcattgaccccctg
gatgtcatcacagggatctctctagagggacttcatgcccagctgatagacagcaacttg
gatccagtggaggtggagaaagcaaagcagggccagaagtcagactacccaaatggcatc
ccagagtgcgggacagatgctctccggtttgccctgtgcgcctacaccagccaaggaagg
gatatcaacctggatgttaatcgtatcctgggttaccgccacttctgcaacaaactgtgg
aatgctgtaaagttcgccatgaggactctgggtgacaagtttgcaccatcggagaaagcc
cagttgtctggagaggagagtgtgtcggacaggtggatcctgtccagactttgtgctgct
gtcgccctctgtaacgctggcttcaaagcctacgacttcccagccatcaccaccgccatc
tacaacttctggctgtacgagctctgtgacgtgtacctggaaagtataaaaccagtcttc
agtaaatcagaagaagagggtgcgtgccagaggctagccctggtgtgcagacagaccctt
tacacctgtctagaggtcggcctccgccttttgtctcccgtgatgccattcgtctctgaa
gaactctaccagaggttaccacgacgacaaccgcagagtgatcctcccagcatatgtgtc
acatcttacccagacacacaggagttctgctggcagagcgatgaggttgaccatgacatg
gagttcatcatggcagttgtcaagaccatccggtcactcagagcagactacaacctgaca
aagaccagagctgactgctaccttcagtgcagagactctgcaaccgtgtcactggtgcag
aaatacaatctgcagatccagaccttgtcttattctcaggccgtcatccctctgacagca
aaccagctcgtcccagaaggctgcgctgtggctattgcatctgacagatgtactgtcaac
cttatgctcaagggtctcattgacatggagaaggaagtaactaagctcatgacaaagaaa
ggtgatttggagaaacagatggaaaaactgagcgagaagatggcaaagagtgactacaag
gagaaggtgccagttaaggtgcaggaacaggatgctgagaagctacggcagagccaggct
gaacatgagaaagtcaaagaagccatagacaatttcaggaaaatgatgtaa
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