Cololabis saira (Pacific saury): 133435700
Help
Entry
133435700 CDS
T09849
Symbol
cicb
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csai03000
]
133435700 (cicb)
Transcription factors [BR:
csai03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
133435700 (cicb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4819
HMG_box
HMG_box_2
Zf_WRKY19
Motif
Other DBs
NCBI-GeneID:
133435700
NCBI-ProteinID:
XP_061573138
LinkDB
All DBs
Position
3:29738832..29782519
Genome browser
AA seq
2725 aa
AA seq
DB search
MRPLKKNRGRSLPLTRGRGGRRKGGSQPLQEKDPKRAKKETLIKATQHSPNTPSKRRHAA
TISDEEPVTNSSPNTKEESAELRKHVESDKNNGKKMEEKTEKEKTVGTNGNSTIPTVSGA
SPTSVQATPQTTNHIPSSGSVSSRKTATFKARIPKKKYTYEHFVNNGSAITSSPTLVQNS
YCSISSIISDNLNSAQNNFKSSNNISNSINEIMNISINGSANNNIKGEINNKTSSHNSCS
GSLTTYINSRSNNCSGNQPSVLTVDSNAEVILFASIDDKTLRTADSQEKESQGGEKELEG
GPNSVRSSSTDTASEHSADLDVMDTTGPNLHQNSHNPAPLLNSQPKEVSLSEALAEALTK
GMKNQRVLARQKKRTIESGLETVDGKNSCFPSHVFSPGVVRQVSGGTIEVLLQGEETLVK
YPFYGGTTMKSSGVENTVELILDAPPPGMAPVAVGTRVCVPFGGEDGGRLLYREGIVAEV
DPHPGVSFPYQVLLSEDRETLGGQVGDEKEKRKVNGQVAWVSRQSLRLLIPPWEFSNLDG
GRTKEREREREREERERREEMEVEREVCQLSIGMGVLGAGARLGHGFSHEGVAGGHTYGS
APPPTHPSTGTSSAMAIMGHGCSDNYSDRQRQKQMNMPEEDAEVSCLNMAHTIGLQPNPG
PSQHRNAVSTSSGYSPPSPHLSVMRGLGPPHLSAIASPQPSLSPALLSSESNITSNLPPS
KTTPTQTPTPTSGVGSSSTSSRSRTPLSLAQQKYKKGDVVCTPNGIRKKFNGKQWRRLCS
RDSCMKESQRRGYCSRHLSMRTKEMEAAGGERGGGGSSSGTVTPSDLRGRASSEFEWDDT
SRESSEISSRGDSRPRLVLPSLLPHELSSRFDFDECEAANMLVSLGSSRSGTPSFSPISN
QSPFSPAPSPSPSPLFGFRPANFSPITASPVLQHRRHRQPSGTGGGGGGSSKAPTPAGGG
ERERHTLGIQPSFHSNLTFTVPMSPSKRKPEAPLPPPIPTHHHDYTPKTELEQADLNSSF
TVLSPQTPVSHSHTHTPTFSRPKGVTTPSSSRPPSSTAVSPPPLLVSPTPPSPLSTDGGP
RRVVPVSQQTLRDSPVIVRNPEVPLAKFTESPLGRGGGANESGVNSTSFKNVGITPLIPQ
SVSGLQVPVPINAAAATVPNGTVLLRSPAQTLVLVSPAPSPLPNIDNPATPFQALSVTVS
TTVTAPALSSIDSSGGREDNRGTGFGGEVQQPVPCHPSPTALLPLILPAETLHPVPRKDI
IMGRPGTVWTNVEPRSVPVFPWHSLVPFLAPTQSDAASQPGEGQHPVNHPQTASLKTECQ
GMAVLSQEPAEAPPIVERIPPMRPLPSSDEPLPEKDKGDAERERPDSETESDVDDPFLPG
IVPEQSISTSPVKRRTQSLSALPKDGDKSSPGKREKDHIRRPMNAFMIFSKRHRALVHQR
HPNQDNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSSSEG
RGVPGAKDIRERSMSESTEPHSVELKGVGPSLVGVSERSMGEEHVGQLTRPRAFSQSAMH
SLEQADRGNKQALAELAQICGDGSSQFSSRAPFHSQTQRGVSEDMTSDEERMVICEEEGD
DDVIEDPYPSSSIDLKCKERVTDSDSENGSGDESDRKRVFAPVICSSSSSSTSHHTPHGR
SVSLSSYPTSKRYDEGRSGGGGFSDHRRKDRSEGERKDPFGGDGGGNVQTSSLSFSSGQS
VISSTSSSAGGPPSSSISSLGTTPPQGIGAVRVASTVVTNVMRPVISTPLPIASKPRDVG
TSSSPHPSERKTLTPQQQTQFLIGAGGGATGGGYYSSSSSNAVGAGLGPGGVVTNFVLGG
ALSGPSAVQLITPAPQPSHHHALPSTVVSAPHSHTNGALPLLQHQFLPASSLAPPGGKAI
TQVQYILPTLPANANPKSPPQHLSQPTSIFNLPTAPPTHVSLANGKQQGTGLPTGYTSSP
AVGVVSPGSRVQTQSPVLQGKMLVPMATVRTAPATAQQFPIVAPPLPVQNGAQSGSKIIQ
IAPMPMVQPQLPQGGAVHPASPFPVTVGTAAVVAPASAPSQAVLLPQAPTRITYVQSTPG
VPSTLPLVSTTTGCSPTQQALPVPGSAYVPSPLATLGFTAIASPGQTLVQPLITGQPSLL
ATAQSPQPSTSAPASGSGNQIVTAIYPPSPSVTMATGVVSMAAVPPSVVYSVSSPSSASP
HILPKHTATPTTVAHSHAQSHPDRHADRHADRHLPPDRCADQQSDRQSDWQAELPTHMER
RFDRQLQTSGSSCAAAPPSGSAVSMRPCSPPLQIQMPGSTPGTPKLTQLPVRLPQKVKAT
VATIPVGSYDGGGRGKDRDREKDREREKEREKDREGGREAAANSHFSFDPEPSGQTGSPS
THPTEDPSSSDRPLEGSSTTNSSDMRSKESTTTKEAGWKESLSSSPLPPPPTTEPTLPPP
QTDKDAPPPKKIKARPPPLKKTFDSVDKTGRVLSEVYFEERFAELPEFRPEEVLPSPTLQ
SLATSPRAILGSYRRKRKNSTDLDSAPDEQVSPKRKSRRRSSCSSEPNTPKSAAKCEGEI
FTFDRPAPDGEDILAELEFEKVPYSSLRRTLDQRRALVMQLFQEQGFFPSAQATAAFQTR
YSDIFPTKVCLQLKIREVRQKIMQTAAPSDSSALGPDPTASLPGPSGSQLDEASGRDGGD
LQDDDVEQGAEMSPENPRDSQESST
NT seq
8178 nt
NT seq
+upstream
nt +downstream
nt
atgagacctttaaagaaaaacagagggcgttctctcccgttaactagaggcagagggggg
cgaaggaaggggggatctcaacctctccaagagaaagatcccaaaagagccaagaaggag
acgctcatcaaagctacacagcatagccccaacactccctccaaacgcagacacgcagcc
actatctctgacgaagaaccagtcacaaacagcagtcccaacacgaaggaggaatctgct
gagctgaggaaacacgtggaatcagataagaacaatggaaagaaaatggaagagaagact
gaaaaggaaaaaacggttggcacaaatggaaatagtaccatacccacggtttcaggagca
tctcctacctctgtccaagcaacgcctcaaaccaccaatcacatccccagttcaggctca
gtctctagtaggaaaacagcaacatttaaggctcgcatacccaagaagaaatatacatac
gagcacttcgttaacaatggaagtgctattacctccagccctacacttgtacaaaacagt
tactgcagtattagcagcataatcagtgataatttgaattctgcccaaaataacttcaaa
agtagtaacaacatcagtaatagcattaatgaaataatgaatataagcatcaatggaagt
gctaacaataacataaaaggtgagattaacaataagactagcagtcacaacagttgctct
gggagccttactacttatatcaatagcagaagtaataattgctcaggtaatcaaccatca
gtgctaacggtggacagtaacgcagaagtgattctttttgcctccatagatgataaaacc
ctaaggacagcagattcccaagaaaaagaatcccagggtggggaaaaggagctagaaggg
ggccctaactcagtgcgctcgtcctccactgacacagctagcgagcactcagctgacctg
gatgtgatggacactacaggaccaaaccttcatcagaactcccacaatccagctcctctc
ctcaattcacagcctaaagaagtcagtctctcagaggcactagctgaagctctgacgaaa
ggcatgaagaaccagagagtgctggctcgccaaaaaaagaggactatagagagtggtttg
gagactgtagatggtaaaaactcatgcttcccatctcatgtatttagtccaggggtggtg
cgtcaggtgagtggaggtacaattgaagttcttctccaaggagaggagacccttgttaaa
taccctttttatggtggaaccacgatgaagtcctcgggggtcgaaaacactgtggagttg
attttggacgcccccccacctggcatggcacctgtggctgttgggacccgtgtgtgtgtg
ccttttggtggagaggatggaggtcgtctgctgtacagagaggggattgttgctgaggtg
gatccacaccctggtgtctcatttccttaccaggtgctactgagcgaagacagagaaacc
ttgggtggacaggtgggagatgagaaagaaaaaaggaaagtaaatggtcaagtagcttgg
gtgtccagacagagcctgagactgctgatccctccatgggagttctcaaatttagatggt
gggaggacaaaagagagggagcgtgaacgggaaagggaggagagagagcggcgggaggag
atggaggtagagagagaagtgtgccagttgagtattggaatgggggtccttggcgccggg
gcaaggttgggtcatgggttttcacatgaaggggttgccggaggacatacttatggaagt
gcccctccacctactcatccctccactgggacttccagtgcaatggccatcatgggtcac
ggatgtagcgataattactctgacagacaaagacagaaacagatgaatatgccagaggaa
gatgctgaggtgtcttgtttaaacatggctcataccattggattacaaccaaatcccggg
ccctcccagcacaggaatgctgtctccacgtccagtggctactctcccccctccccccac
ctttctgtgatgcggggtctaggacccccgcatctctctgccatagccagtcctcagcca
agcctatcccctgccttactgagctccgaatcgaacatcacttcaaacctacctccatct
aagaccactcccacccagaccccaactcccacttctggtgtgggttcttcttctacctcc
tctcggtccaggactcctctctcattggcccagcagaaatacaaaaagggtgacgtggta
tgcacgcctaatggtattcgtaaaaagttcaatggaaagcagtggaggaggttgtgctcc
agggacagttgtatgaaagagtctcaacgtcgaggatactgctccagacacttgtcaatg
agaaccaaagagatggaggcagcaggtggagagagggggggaggaggcagcagctcaggg
acagtcaccccttccgaccttcgggggagagcaagcagtgaatttgagtgggatgacaca
tcaagagagagcagtgagattagtagcagaggagactccagaccccgcttggtccttccc
tccctcctccctcatgaactgtcgtcacggtttgactttgatgagtgtgaggctgccaac
atgcttgtgtcattagggagttcccgctctggcaccccctctttctcccccatctccaac
cagtcacccttttcccctgccccctctccctcgccctctccactgtttggtttcaggccc
gctaacttctcccctattactgcctcccccgtcctgcagcaccggaggcacaggcaaccc
agtggcacaggtggaggagggggcgggagtagtaaggcaccaacccctgcaggtggagga
gaacgggagaggcacactttgggaatccagccctccttccacagtaacctgacatttaca
gtccccatgagtcccagcaagagaaaacccgaagcaccccttccacctcccatccccaca
caccaccacgattacacacccaaaacagagctggagcaggccgacctcaacagctctttc
acagtgctgtccccccaaacaccagtctcacattcccacacacacacacctactttctcc
cggcccaaaggagtaacgaccccctcctccagcaggcccccatcctccacggctgtctcc
cctcctcctctgctagtatccccaactcctccttctcccctcagtaccgatggagggcct
cgtcgtgtggtccctgtctctcaacaaactttgcgggactcccctgttattgtgaggaat
cccgaagtcccactggcaaaattcactgagtctcccctcggaagaggaggaggtgcaaac
gagagtggggtaaatagcacctcatttaaaaacgtcggtataaccccccttattcctcag
tcggtctccggtctccaggttcctgtcccaattaatgctgctgcagctacagtacccaac
ggcaccgttctcttgcggagcccagctcaaactctggtgcttgtgtccccggcaccttct
cctttgcccaacatcgacaaccctgccaccccctttcaggccttatcagttacagtcagc
acaacagtcacagctccagctctgagtagcatagacagctctgggggacgagaggacaac
aggggcacggggtttggtggagaagtccagcagccagttccatgtcacccctctcctact
gctctgctgcccctgatcctgcccgcagaaactcttcacccggtccctcggaaggacatc
atcatgggacgtcctggcacagtgtggacgaatgtagagcctcggtccgttccagtcttc
ccttggcattcattggtcccttttctggcacctacccaatcagatgctgcttctcagcca
ggagagggacagcacccagtcaaccaccctcaaactgccagtctgaagacagagtgtcag
gggatggcagtgctgtcacaagagcctgcagaggcacctccaattgtggagagaattccc
ccgatgcgacctcttccttcttctgatgagccgcttccagagaaggacaaaggagatgca
gagagggagaggcctgacagcgaaactgagagtgatgtggatgaccccttcctcccagga
attgtgccagagcagtcaatttccacatcaccggtaaagagacgtactcagtctctcagc
gcgctacccaaagacggcgataagagcagtccaggaaagagggagaaggaccacatccgg
cgaccaatgaacgcatttatgattttcagtaagcgccatcgagcgttagtgcaccagcgg
catccgaaccaggacaacaggacagtcagcaagattcttggggagtggtggtacgctctg
ggacccaaagagaaacagaagtatcatgatttggccttccaggtaaaagaggcccatttt
aaagcccaccccgactggaaatggtgcaacaaagacagaaagaagtctagttctgaaggt
cgtggagtccctggggctaaagacataagagagaggagcatgtctgaatccacagagcct
cattctgtggagctgaagggtgttggtccaagtctggtgggcgtctccgagaggagtatg
ggagaggaacacgtaggccaactcacccgaccccgggctttctcgcaaagcgctatgcac
agtctggagcaggctgacaggggtaacaaacaagccctggcggaactggcacagatctgt
ggagatggtagcagtcagttttcaagtcgcgcccctttccattcgcagactcaacggggg
gttagtgaagacatgaccagtgatgaagaacgcatggtcatctgtgaggaggaaggtgat
gatgatgtcattgaggatccttatcctagcagctccatagatctcaagtgtaaggagcgt
gtgactgacagtgatagtgagaatggttcaggggacgaaagcgatcgtaagagagttttt
gctccagtcatctgctcttcttcatcatcctctacttcacaccatacccctcatggcagg
agtgtttcactctcctcttatcccaccagcaagcgctacgatgaggggagatcaggaggg
ggagggttttcagaccacaggaggaaggacagaagtgaaggagaaagaaaggaccctttt
gggggtgacggaggtggaaatgtacaaacctcctctctctctttctcttctggtcagtcg
gtcatatcttctacttcttcttcagctggaggccctccttcctcatcaataagttcactt
ggaacaaccccaccccagggcattggtgctgtgagagtggcttccacagtggtgaccaat
gtaatgcgtcctgtaatcagtacaccgctcccaatcgctagcaaacctagagatgtaggc
acttcatccagccctcatccttcagagagaaagaccctgactccccagcagcaaacacag
tttctgataggagcaggaggtggggctacagggggtgggtactactcttcatcatcatcg
aatgctgtaggtgccggtttaggcccgggtggtgtcgtgactaattttgtgttaggaggg
gctctgtccggcccgtctgctgtacagctcatcaccccagcccctcagccatcccaccac
cacgcccttccctccacagtcgtttcagccccacatagccacacaaacggagccctgccc
ctgcttcagcaccagtttctcccagcttcctccctggcaccccctgggggtaaggccatc
acacaagtccagtacattctgcccaccctacctgctaatgccaaccccaagagcccaccg
cagcacctcagccagccaaccagtatcttcaacctacccacagctccaccaacgcacgta
tccttggccaatgggaaacagcagggtactggtttaccaacgggatatacgtccagtcca
gcagtgggtgtggtcagccctggatcgagagtgcaaacgcagtctccagtgctccagggt
aaaatgcttgttcccatggcaacagtgcggactgcgccagccactgcccagcagtttccc
atcgtggctccacctcttcctgttcagaatggcgctcagtctggaagcaagatcatccag
atagctcccatgcctatggtccagccccagcttcctcagggtggagccgtgcatcctgcc
agccctttccctgtaaccgtgggcacagctgcagtggtagcaccagcatcagccccctcc
caggctgtgcttctgccacaagcacctactagaatcacatatgtccagtccactccaggg
gtcccatctactctgcctctagtctccacaacaacgggctgctcccccacacagcaagct
ctcccagtgcctggttctgcatatgttccatcacccctggcgacacttgggttcacagca
attgcatcacctggacagacactggttcagccactgatcacaggtcagccgtcgctgcta
gccacggcgcagtccccgcagccttccacttcagcccctgcctcaggctccggcaaccag
atagtcactgccatctaccctccctcacctagtgtcaccatggcaaccggggtagtctct
atggcagcagtaccccccagtgtggtgtactctgtgtcgagcccttcgagtgcttctccc
cacatcctgcccaaacacacagcaacccccaccaccgtcgcacactcgcatgcgcagtct
catccggacagacacgcagacagacacgcagacagacacctgcctccagacagatgtgcc
gatcagcaaagtgacaggcagagcgactggcaggcagagctgccgactcacatggaaaga
cggtttgataggcagttgcagacctctggcagtagttgtgcagcagcacctcctagtggc
tcagctgtttccatgcggccctgcagtccaccccttcagatccaaatgcctggcagtaca
ccgggtacgcccaagctcacacaacttccagttaggctcccccagaaggtgaaggcaaca
gtggcaaccatcccagttggcagctacgatggaggaggcagaggaaaagacagagaccgg
gaaaaagacagagagcgggagaaggaacgagaaaaggatagggagggaggaagagaagct
gcagccaatagtcatttctccttcgatcctgagccctcagggcagacggggtctccatca
acacatcccacagaggatccatcatcctctgacaggcccctggagggttccagtactaca
aactcatctgacatgaggagcaaggaaagcacaaccaccaaagaggctggatggaaggag
tcgctctcctcctctcctctcccccctccaccaaccacagagcccactcttccaccccca
cagactgacaaagatgctcctccacccaaaaagatcaaagcccgcccaccaccactaaaa
aagacctttgactctgtggacaagactggcagagtgctttcagaagtatattttgaagag
cgctttgctgagcttcccgagtttcggcccgaggaagttttgccctcacccaccttgcag
agtctggccacgtcacctcgcgccatcttgggcagctatcgccgcaagaggaaaaactca
acagatctggactcggcccccgatgagcaagtctcaccaaagagaaaaagtcgtcggcga
tccagctgtagctccgagcccaacacacctaaaagtgccgcaaagtgtgagggagaaatc
ttcacttttgacagaccagccccagatggagaagacatcctggcagaactggagtttgaa
aaggtgccgtactcgtccctgcgacgaacactggaccagaggagagcacttgtcatgcag
ctgttccaggagcagggcttcttcccatcagctcaagccactgcagctttccagacgaga
tactccgacatatttcccaccaaagtgtgtctgcagctgaagattagggaggtgcggcag
aagatcatgcagactgctgctccttccgactcctctgctttaggcccggaccctaccgcc
tcgctcccaggaccgtctggctcccagttagatgaggcttccgggagagacggaggagac
ctgcaggacgacgatgttgaacagggagcagaaatgagcccagagaatccccgtgattca
caggaatcttctacatga
DBGET
integrated database retrieval system
