Cololabis saira (Pacific saury): 133436384
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Entry
133436384 CDS
T09849
Symbol
ddx61
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133436384 (ddx61)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133436384 (ddx61)
03036 Chromosome and associated proteins [BR:
csai03036
]
133436384 (ddx61)
Enzymes [BR:
csai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133436384 (ddx61)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
133436384 (ddx61)
mRNA degradation factors
5'-3' decay
Decapping complex
133436384 (ddx61)
Chromosome and associated proteins [BR:
csai03036
]
Eukaryotic type
Gene silencing
piRNA pathway
133436384 (ddx61)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
MS_TIM-barrel
NA-iREase2
CMS1
TmoB
Motif
Other DBs
NCBI-GeneID:
133436384
NCBI-ProteinID:
XP_061573195
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All DBs
Position
3:30753185..30765114
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AA seq
481 aa
AA seq
DB search
MATARTANPSPMIGLNRPANGQLRGQSKPAGQQSGLCSTGQQPSALQRRSNIPQSSGGIK
FGDDWKKCLDLPPKDNRVQTTDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQAIVLVPTRELALQMSQISIQL
SKHLVGLKVMATTGGTNLRDDILRLDETVHVVIATPGRILDLLKKGVAKMDLTQMMVIDE
ADKLLSQDFVILIEDIISFFPKNRQILLYSATFPISVQKFMNKHLKKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNGETYLHRIGRSGR
FGHLGLAINLITSEDRYNLKAIEEQLMTDIKPIPSSIDKSLYVAEFHSIDPDADDDDEGG
A
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggctactgcaagaacagcaaacccatcaccaatgattggactgaacagaccagcaaat
gggcagctcaggggacagtccaagccggctggacagcagtcaggactttgttcaactggc
caacagcccagtgccctccagagaaggagcaacattcctcagagcagcggaggcatcaag
tttggtgatgactggaagaagtgcctggatcttcctccaaaagacaacagggtacaaact
acggatgtgacgtcaacaaagggaaatgaatttgaagattactgcctaaagcgggaactt
ctaatggggatctttgagatgggctgggagaaaccctcccctatccaggaggaaagcatt
cctatagctttatcaggcagagatatcttggctcgggccaagaatggaacagggaaaagt
ggagcctacctcatccccctccttgagaggatagacctaaagaaggatcacatacaagcc
atagtgttggtgccaacaagagaactggcccttcagatgagccaaatcagtattcagctc
agcaagcacctggtagggctcaaagtcatggctaccaccggtggaaccaacttgagggat
gatatcctccgcctggatgagacagttcatgtagtgattgccacaccaggcaggatactt
gacttgttaaagaagggtgtggcaaagatggatctgacacagatgatggtgatagatgaa
gcagacaagttgctgtctcaggactttgtgatcctgattgaggatatcataagcttcttc
ccaaagaatcgtcagattctgctttactctgccactttccccataagtgtccaaaaattc
atgaacaagcacctgaagaaaccctacgaaatcaacctgatggaggagctcacattgaag
ggcatcactcagtattatgcctatgtgactgaaagacagaaagttcactgtcttaacacg
cttttttctaggctgcagatcaatcagtcaatcatcttctgtaactccacccagagagtg
gagctcctggcaaagaaaatcacccagctgggctattcatgcttctatattcatgcaaag
atgatgcaggagtacaggaaccgggtgttccatgacttcagaaatggcttgtgcagaaac
ctcgtctgcacagacttgttcactcggggaattgacatccaggcagtaaatgtcgtcata
aattttgacttccccaaaaatggagagacctacttgcaccgtattggcagatcaggacgt
ttcggtcacttggggctggccatcaatctgatcacttcagaagatcgctacaacctgaag
gctatcgaggaacagctgatgaccgacataaagcccatccccagcagcattgataagagt
ctgtatgtagcagagtttcactccattgacccagatgccgatgatgatgatgaagggggt
gcataa
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