Cololabis saira (Pacific saury): 133438073
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Entry
133438073 CDS
T09849
Symbol
si:dkey-22o22.2
Name
(RefSeq) neural-cadherin
KO
K27892
neural-cadherin
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
csai04515
]
133438073 (si:dkey-22o22.2)
Cell adhesion molecules [BR:
csai04515
]
Cadherins
Cadherin related
133438073 (si:dkey-22o22.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Laminin_G_2
Laminin_G_1
Ig_Shg
CADH_Y-type_LIR
Fibulin_C
Cadherin_CELSR2_9th
EGF
Cadherin_pro
hEGF
He_PIG
EGF_Teneurin
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
133438073
NCBI-ProteinID:
XP_061573337
LinkDB
All DBs
Position
3:34738034..34896623
Genome browser
AA seq
2920 aa
AA seq
DB search
LLLLLLQVPPGRLSVSAHRGHPARYSGHIAENSPAGTPVVGVRVPIAPAGCAGLNASLKG
DYASDFRLIHRPGPRSNSRGHLGLVSAKALDREFIAMYELLLELELPPRCHRRPAVVQVE
VSDRNDNIPRFTSGNKTVEVDELTLLGTELARFDAKDGDAERNGRVTFYAWPESDVLHVV
PQTGQVRLVGSLLGISQATLRVCVKDGGDVSLTGEPVFLRVSVRASGGARRRPRALTEDV
TYTVTVPDRVRVGDLVFTVPDLRFDRRWFEVISEADSAVVQVERESGRLYLARSLREPAE
VVVKIQSLTGDEWYLCRLALSMPSQADLQWAMFPSPYLATVGPDASPSSVVYRLSARQRD
GIMGQVQFLLLDGAEECFEVDRRSGVIRTTGRPLTPSKEYLLQVQAVDGRGRKSPPATVA
VLAGYRPPQFTNSTYSLNVPENAPAGQPVAVVQAVSFQKKTLSYMLQVNPGNLFSINQES
GALSLTRTVDYESGHNLHTLQVRASEPDTGLSSAAEVVVHVMDENDCTPEFLHSIYTRDN
IPESVAAGTSLLQVLARDCDSGVNSELSYFVPSDDFDITSGGVVSPAHRLDYERPNHIYE
FVVVAVDAGTPPRTGTASVRIRVANSNDEAPVFSQSIYKTFLSEDAGPDTLVAIVHANDP
DGDGVSYAITGGNEDSNFQLDNQKGIIKLRRSPPPRLRGPQYVLNITATDDNASGGPYPL
SSSAQVIVGINDINNNKPVFEECQNYGQNAAVLENQPPGTFVQRVQAHDADMGVNGEVKY
GIMHRDGVSSGFNIDPDTGVITTTVSFDRERQREFTLSVTATDQAEEPLIGICQITVVIL
DQNDNGPKFENSRYQYFLREDTPVGTSFLRAAAHDDDQGSNAAITYSLSNQNPAYLHINP
STGWVYVNHPISQTSRINQQIVASDGGNRSSSVELTVIITNVHNQPPQWEQPEYWVTVPE
NTVRDAKIVTVKATSPLGDPRVTYNLEEGQVPETNMPVRFYIKPNRADGSASILVAENLD
YETTRFFTLRVRVQNVAAVPLASFTTVYVNVTDVNDNVPFFLSSTYEATVPEGAQIGTSV
VQVSATDLDSGPHGMIHYVILKDASGDSQFFSIDSHSGVIFTRASFDREQKASYLIEVQS
QDGSESARQGQQGQPNTDTAYIRIFITDVNDNAPAFAQPVYEVSVEEDKEVGFVLITVTA
NDEDEGANAKLRYQITSGNTMGTFDVEPEVGTVFVAQPLDYEMVQRYELRLVASDGKWEN
ETLVVVQVVNRNDEAPVFSQTEYHATVTEELTLLPVFILEVSATDPDQEADQNALRYSLH
GQGAGGEFTIDERTGTIYAQRRLDREERPAWRFLVLATDEAGAGLTGFADVLLEVTDIND
NVPFFPCPALEVDGCFVGHVPENSPADTSIMEMRAMDLDDPNEGRNAMLTYSIIKNIRNE
INLNLFAINSTTGTIYTVLRSLDRETEGRYLVVVEARDGGGLSGTGTATILVSDVNDHPP
VFTQRVYSTQVTEDLEVNSEVLVVSATDGDQGENAAVTFSIVGGDEDRKFFVETDKLNRR
GVIKLKKKVDFEKPQERSFNLTLKAEDADFFSLAYCLVQVEDSNDHAPVFLPQFYESPAM
SEDVPVGTIVAQVTASDLDSGQNGRFSYSISRESDPYGQFLVDQSGWVVVADSLDREKIS
QHRIMVLATDAGTPPLTGTAIVMVTVLDINDNGPEFEAPYKPVVWENTPATQAVRMNETS
LLLHATDCDTASNGGPFSIRLLMLTSDATNFNLTDFRNGSAAITTLRTFDRERQKEYRLP
ILMIDSGSPPMSSTSTLTVVIGDRNDHPHLPGHTHFIVYSYEGILPTTVLGQIQSPDLDD
WSEKVYRFEGKSTRLFGLDQRSGQLSIREGAPPGSYLLRVRVSDRTWPDVTSAAQVDVTE
LHQDALQRAASIRLTNLTVEEFFTSSGGGDQSRFHRLGRALSEILQILPKNVQIFSVANS
SQPGEKALNVWFAAHGSPYYKAEKLHGYVAANKAKLEAALGVSVSQVGVDDCPYTECSQS
GGCSNEVSFGQTPVALSSGNVSLVSLSASSTARCGCRGRELVHLPCSAHFFNPCLNGGTC
QDGPLGYRCKCPPMFDGPECQQTKHSFGGQGYAWFPPIKPCFQSHISLEFLAESANGLLF
YNGPLGLVLPGEQEDFIAVELRNGIPTLSVNHGSGTLTLQLPPKSTINDRGWHRLDIFSD
GKVVQLVLDQCGGVAVNELEGIGGQAWEMDESGCRARGETPGNQRYLNVFQPLQLGGVKE
MSPYRRYRSFTGCIRNLVVDSQVYDLAAPGESVDSAPGCRLTDGVCVTAAGPSCGVHASC
LADWGSFSCECHPGYSGHKCDKALPEFSLDSNSVVRFQLRGGGSSRRTSIQMLLRTRATS
GTLLSAASREANEYIVLEVIEGHISVRANLGDGAHALRLPNHRVDIGQWVLVSLSRYDNT
FTLRLEQGGGSREVRARLGSRKEIVVHPASVTVGNGPKAGDKTDFTGCLRDVRFNGQALP
LDGQSRDLVTVLERRGVSSGCSSSACSGQPCRSPLRCIDLWRKHQCKCPGAQVTVTDDSG
EQRCVPSPCGPSSCRNGGTCQALSPDSYRCRCQEGFRGQHCELGQVKGQRLAALSPSSIL
AISMCLLFFIVVLVAVTVWNQKGSRNKFRKRGVYHIPAEHESWEDIRENILNYNEEGGGE
QDQNGYDITELKRPLCSSLSQSSSCTTAPLIKSSPGSQEEVHPSSSSCSSGAPYLSISQH
HHHHHQHAAADASYHNYSAHAGREVETSDAGSYADAPSGSRSHGDFKSYVARIIWEADND
GEALPPDSYHVWCVEGSGSAAGSLSSLGSAVSRRRISTGDKEEQEEDDERGFVNDRLSRW
GPKFQTLSDMYDRPQLGLTYRDTIAYMQRNHSHDPLPQHQ
NT seq
8763 nt
NT seq
+upstream
nt +downstream
nt
ctgctgctgctgctgctccaggtcccgccggggcgcctctccgtctccgcgcaccgcggc
cacccggcgcgctactccggccacatcgcggagaactctccggccgggaccccggtggtc
ggggtgagggttccgatcgcacccgcgggctgtgccggcctcaatgccagcctcaaaggg
gattacgcgtctgactttagactcatccatcggcccggaccccggagcaactcccggggc
cacctgggcttggtctccgccaaagctctggacagagagttcatagccatgtacgagctg
ctgctggagctggagctgccgccgcgctgtcacaggagaccggccgtcgttcaggtcgag
gtgtcggacaggaacgacaacataccccggttcaccagcggaaacaagacggtcgaagta
gacgagttgacgcttctcggaaccgagctggctcgctttgacgcgaaggacggagacgcg
gagaggaacggacgcgtgactttttacgcatggccagagtctgatgttttgcacgtggtt
ccgcaaacgggccaggtgaggctcgtcgggtctctgctggggatcagtcaggcgactctg
cgcgtgtgcgtgaaggacggcggggatgtgagtctgacgggagagccggtgttcctgcgc
gtcagcgtccgtgcgtccggcggagcgcgccggaggccccgcgccctgaccgaggacgtc
acctacacggtgaccgtccccgaccgcgtccgagtcggggacctggtgttcacggtgccg
gacctcaggttcgaccggcgctggttcgaggtgatatccgaggcggactccgccgtggtg
caggtggagagggagtcggggcgcctgtacttggcgcgcagcctgcgggagccggcagag
gtggtggtgaagatccagagcctcacaggtgatgagtggtacctgtgcaggttggctctg
agcatgcccagtcaggctgacctgcagtgggcgatgtttccctcaccttacctggccact
gtgggccctgacgccagtcccagctccgtagtctacagactatcggcacggcaacgagat
gggataatgggacaagtccagttcttactactggatggtgctgaggagtgtttcgaagtg
gaccgtcgaagcggtgtgatcaggacaacaggacgaccgctaacacccagcaaagagtac
ctgctgcaggtgcaggcggtggacggacgaggccggaaaagtccgccagccaccgtagcc
gtcctcgccgggtaccgaccgccacagttcaccaactccacctacagcctgaacgtgcct
gagaacgctcctgctggccaacctgtcgctgtggtccaagccgtctccttccagaagaag
actttatcgtacatgctccaggtgaatcctggaaatctcttcagcatcaatcaggaaagc
ggcgcgctcagcctgaccaggaccgtagactacgagagcggtcataacctccacacgctg
caggtccgagcctccgaacccgacaccggcctcagcagcgcggcagaggttgttgtacat
gtaatggatgagaacgactgcacacctgagttcctgcactccatttacaccagagacaac
atacctgagagtgtagcagctggaacgtccctgctgcaagttctggctcgtgactgtgac
tcaggagtcaactcagagctctcttacttcgtaccaagtgatgattttgacatcacatct
ggaggtgtggtcagccccgcccatcgcctggactacgaacgacctaatcacatctacgag
tttgtggtcgtcgccgtggatgcggggacgccccctcgcaccgggacagcctctgtccgc
atccgggtcgccaatagcaacgatgaggcgcccgtcttctcccagagcatatataagacc
ttcctcagtgaggatgctggtcctgacacgctggtcgccatcgttcatgccaacgaccca
gatggcgacggggtctcctacgccatcaccggcggcaacgaggacagcaacttccagctg
gacaaccagaagggcatcattaagctgcggcggagtccacctccgaggttgaggggccca
cagtacgtcctcaacatcacggccacggatgataatgcatccggtgggccgtacccgctc
agcagctctgctcaagtcatcgttgggatcaacgacatcaacaacaacaagccggtgttc
gaggagtgtcaaaactacggccagaatgcggcggtgctggagaaccagccaccgggaaca
tttgttcagcgcgtgcaggctcacgacgctgacatgggggtcaacggcgaggtcaaatat
ggcatcatgcacagagacggcgtgtcgtctgggtttaacatcgatcctgacactggcgtg
atcacgaccacggtgagcttcgaccgcgagcgtcagagggagttcacactgtccgtgacg
gccaccgatcaggccgaggagccgctcatcggaatctgtcagatcacggtggtgatctta
gatcagaacgacaacggccccaagtttgaaaacagccgctaccagtacttcctgagggag
gacaccccagttgggaccagtttcctgcgagcggcggcccatgacgacgaccagggaagc
aacgcggccatcacttactcgctgtccaaccaaaatccagcttacctgcacatcaacccc
agcacaggctgggtttatgtcaaccatcccatctcacagacatccaggatcaaccagcag
atcgtggcatctgacggggggaaccgcagcagctctgtggaactgaccgtcatcatcacc
aacgtccacaaccagccgccgcagtgggagcagcctgagtactgggtcactgtgccggaa
aacacagtgcgagatgccaagatagtgactgtcaaggccacatctccccttggtgacccg
cgggtgacctacaacctggaggaaggtcaggtacctgagaccaacatgccagtgcgcttc
tacatcaaaccaaaccgggcagatggttcagcatcaatcctggtagctgagaaccttgac
tatgagacaacgcgcttcttcacactgagagttcgagtgcagaacgttgccgctgtgcca
ctcgcatccttcaccaccgtgtacgtcaacgtcacagacgtcaacgacaatgttcctttc
ttcctgtcatccacttacgaggccacggttcctgaaggagcgcagatcggcacgtcggtg
gtgcaggtgtcggccacagacctggactctggtccgcacgggatgatccactatgtgatc
ctgaaggatgcgagcggggattctcagttcttcagcatcgactcgcacagcggcgtcatc
ttcactcgcgcctcatttgaccgcgagcagaaagcgtcctacctgatcgaggtgcagtcg
caggacggctcagagtcagcccgacagggccagcaaggccagccgaacacagacacggcc
tacatcaggatcttcatcactgacgtcaacgacaacgccccggcattcgcccagccggtg
tacgaggtgagcgtggaggaggacaaggaggttgggttcgtcctcatcaccgtcacggcc
aacgacgaggatgaaggtgccaatgcaaagctgcgctaccagatcacctcaggaaacacc
atgggaacctttgacgtggagcccgaggtgggcaccgtcttcgtggctcagccactcgac
tacgagatggttcagcgctacgagctgcggctggtggcttctgacgggaagtgggagaac
gagacgctggtggtggttcaggtggtcaaccgcaacgatgaggcgcccgttttcagccag
accgagtatcacgccacggtgacggaggagctcaccctgctccctgtgttcatcctggag
gtgtccgccaccgatccagaccaggaggccgaccaaaacgccctccgctactccctccac
ggccagggtgccggtggcgagttcaccatcgacgaacgcaccgggaccatatacgcccag
cgtcgcttggaccgcgaggaacggcccgcctggagattcctcgtcctcgccaccgatgaa
gcgggggctgggctcacgggattcgccgatgtgttgttagaagtcacagacatcaacgat
aacgtccccttcttcccctgcccagctctggaagtagacggatgctttgtcgggcatgta
cccgaaaattcccccgcagacacttccatcatggagatgcgggcgatggacctggacgac
cccaacgagggcaggaacgccatgctcacctacagcatcatcaagaacattcgcaatgag
atcaacctcaacttgttcgccatcaactcaaccacggggacgatctacaccgttctacgt
tctttggaccgggagacggaaggccggtatctggtggtggtggaggctcgtgacggaggc
ggcttgtcaggaaccgggacagccaccatcctagtctcagacgttaatgaccacccaccc
gttttcactcagagggtctactccactcaggtgactgaagacctcgaggtgaacagtgaa
gttcttgtagtttccgccactgatggagaccagggggagaacgctgctgtaaccttcagc
atcgtcggcggagacgaggacaggaagttctttgtggagacggacaagctgaatagacgt
ggcgtgataaaactcaagaagaaggtcgactttgagaaaccacaagagagatctttcaat
ctgaccttgaaggctgaggatgcagatttcttcagtctggcctactgtctggttcaggtg
gaggactccaacgaccacgctcccgtcttcctcccacagttctacgagtcgcccgccatg
tcagaagatgtccctgtggggacaattgtcgctcaggtcaccgcgtccgacctggactcg
gggcaaaacggacgcttttcgtacagcatctccagagagtccgacccgtacggtcagttc
ctggtggaccagtcgggttgggtggtggtggccgattctctggacagggagaaaatctct
cagcacaggatcatggtcctcgctactgatgccggtactccacctctgactggcaccgcc
atcgtcatggtgaccgtgctcgacatcaacgacaacgggccggaatttgaagctccctat
aagcccgtggtgtgggagaacaccccagcaacccaggcggtacgaatgaatgaaacgtcc
ctgctccttcacgccactgactgcgacacggcctctaacggaggcccgttctccatccgg
ctcctcatgctcacctcggacgccaccaacttcaacctgacagacttcaggaatggaagc
gcggccatcaccaccctacgcaccttcgaccgcgagcgccagaaggagtaccgcctccca
attctcatgattgacagcggctctcctcctatgagctcaaccagcacgctgactgttgtc
atcggcgacaggaatgaccacccacacttacctggacacacccactttattgtctacagt
tatgaaggtattctcccgacgactgtgctcggtcaaatacagtcccctgaccttgatgac
tggagtgagaaagtgtaccggttcgaaggcaaatcaaccaggttgttcggtctggaccag
agatccggtcagctcagtatcagagagggagctcctccgggctcgtacctcctgcgggtg
cgtgtgtcagaccgcacctggcccgacgtcacgtctgccgctcaggtggacgtgacagag
ctgcatcaagacgccttgcagcgagccgcctccatccgcctgaccaatcttacagtggag
gagtttttcacgagcagcggtggtggcgaccagagtcggttccaccgtctgggacgggca
ttgtctgaaatcctgcagattttgccgaagaacgttcagatcttctctgtagcgaactcc
agccagccgggcgagaaggcgctcaacgtttggttcgctgctcacggctcgccgtactac
aaggcagagaaactgcatggctacgtggcagcaaacaaagccaagctggaggccgcgttg
ggggtgtcggtctctcaggtgggtgtagacgactgtccctacaccgagtgctcccagtct
ggaggctgcagcaacgaggtttcgttcggtcagacccccgtggctctcagctccggtaac
gtctctctggtgtcgctctcggcctcttccactgcgcggtgcggctgcaggggccgagag
ctggtgcacctgccctgctccgcgcacttcttcaacccctgcctcaatgggggcacctgc
caggacggaccgctgggataccgatgcaagtgtcctcccatgttcgacggtccggagtgc
cagcaaaccaaacacagcttcggtgggcagggatacgcctggttccctcccatcaagcct
tgcttccagagccacatctccttggagttcctggccgagtcggccaacgggctgctgttt
tacaacgggccgctcggcctcgtcctccccggggagcaggaggacttcatcgccgtagag
ttgaggaacgggattccgacgctgagcgtaaaccacggatcgggaacgctgacccttcag
ctcccgcccaaatccaccatcaacgaccggggatggcatcgcctcgacatcttcagcgat
ggaaaggttgtgcagctggtgctggaccagtgtggaggcgtggcggttaatgagctggag
ggaattggaggccaagcctgggagatggatgaatccggctgcagggctagaggagagacg
cccgggaaccagcgctatctaaatgtgttccagccgcttcagttggggggagtgaaggaa
atgtctccttacagacgttacagaagtttcaccggctgcatccgaaacctggtggttgac
agtcaggtgtacgacctagcagctcctggggagagtgtggacagcgctccgggctgcagg
ctgacagacggggtgtgtgtaacggcagctggtccctcttgtggtgttcacgcctcctgt
ctcgctgactggggctccttcagctgcgaatgccacccaggatactccggacacaagtgt
gacaaggccctcccggagttctccttggactcgaatagcgtggtgcgttttcagctcaga
ggaggtggcagctctcgacgtaccagcatccagatgctcctccgaacacgagccacttca
ggcaccctgctctctgctgcgtcccgggaagccaacgagtacattgtcctggaggtcatc
gaaggccacatctcagtgcgtgccaacctgggtgacggcgcgcacgcgctgcgcctgccc
aaccaccgagtggacatcgggcagtgggttctggtcagcctcagtcgctatgacaacacg
ttcaccctgcgactggagcagggcggcggctcgcgggaggtccgggctcggctggggagc
cgcaaggagattgtggttcatccggccagcgtaacggttggcaacgggccaaaggccgga
gacaagaccgacttcacgggctgtctgcgggacgtccggttcaacggtcaggccctccct
ctggatgggcagagccgggacttggtgacggtgctggagaggcgaggggtcagctccggt
tgctccagcagcgcctgcagcggtcagccctgccgcagcccgctgcgctgcatcgacctg
tggcggaagcaccagtgcaagtgtcccggcgctcaggtgacggtgacggacgactccggg
gagcagcgctgcgtgccgtcgccctgcggaccgtcctcctgccgtaacggcggcacctgc
caggcgctgtcccccgacagctaccggtgccggtgtcaggagggattcaggggtcagcac
tgcgaactggggcaggtcaaaggtcagcggctggccgccctcagtcccagctccatcctg
gccatcagcatgtgtctgctcttcttcatcgtggtgctggtggccgtgacggtttggaac
cagaaaggcagccggaacaagttcaggaaacggggagtgtaccacatccctgctgaacac
gagagctgggaggacatccgcgaaaacatcctcaactacaacgaggagggaggaggagag
caagaccagaacggctatgacatcacagaactgaagcgtccgctgtgctccagtttgtct
cagtcgtcctcctgcaccaccgccccgctcatcaaatcctcgccgggctcccaggaagag
gttcacccgtccagctcctcctgcagctcgggcgctccctacctcagcatctcgcagcac
catcaccaccaccaccagcacgccgccgccgacgccagctaccacaactacagcgctcac
gcaggcagagaagtggagacgagcgacgccggcagctacgccgacgccccgtccgggtcg
cgctcccacggggacttcaaaagctacgtggcgcgaatcatctgggaggcggacaacgac
ggcgaggccctcccgccggactcctaccacgtgtggtgcgtggaaggctccgggtcggca
gcgggcagcctcagctccctcgggtctgccgtctcccgcaggaggatttccacaggcgac
aaggaggagcaggaggaagatgacgagcggggttttgtgaacgacaggttgtcgcgctgg
ggacccaagtttcagacactgagtgacatgtacgaccggccccagctgggcctcacgtac
agagacacgatagcctacatgcagaggaaccacagccatgaccccctgcctcagcaccaa
tag
DBGET
integrated database retrieval system