Cololabis saira (Pacific saury): 133440947
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Entry
133440947 CDS
T09849
Symbol
smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133440947 (smarca5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csai03021
]
133440947 (smarca5)
03036 Chromosome and associated proteins [BR:
csai03036
]
133440947 (smarca5)
Transcription machinery [BR:
csai03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
133440947 (smarca5)
Chromosome and associated proteins [BR:
csai03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
133440947 (smarca5)
RSF complex
133440947 (smarca5)
WICH complex
133440947 (smarca5)
B-WICH complex
133440947 (smarca5)
NORC complex
133440947 (smarca5)
BRF complex
133440947 (smarca5)
NuRF complex (fruit fly)
133440947 (smarca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
DBINO
Myb_DNA-binding
AAA_14
Motif
Other DBs
NCBI-GeneID:
133440947
NCBI-ProteinID:
XP_061574279
LinkDB
All DBs
Position
1:22255358..22266280
Genome browser
AA seq
1032 aa
AA seq
DB search
MSESAECVEPREEPAEPEEAAAAEEKSDSSDAGKESSSEAGPDGQDASSSPTKESSAGYE
EKVQTDRTNRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSAGDN
RHRRTEQEEDEELLNESTKTTNVCTRFDDSPSYVKSGKMRDYQVRGLNWLISLYENGING
ILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRAVCLI
GDRNERNALVRDVLLPGEWDVCVTSYEMLIIEKAVFKKFNWRYLVIDEAHRIKNEKSKLS
EIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAEDFDSWFDTNNCLGDTKLV
ERLHTVLRPFLLRRIKADVEKTLLPKKEIKIYVGLSKMQREWYTKILMKDIDILNSAGKT
DKMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLAVNSGKMMVLDKLLPKMKVQGSR
ILIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHEERQISINAYNEPNSSKFIFMLSTRA
GGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQQKQVRVFRFITENTVEERIVERA
EMKLRLDSIVIQQGRLVDPSANKIGKDEMLSIIRHGATHVFASKDSEITDDDIDQILERG
ERKTMEMKEKLSSLGESTLRNFTMDTENSSVYTFEGEDYREKKKVITNWIEPPKRERKAN
YAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGYKVP
RNPELPNSATVQKEEQGKIDEAEALTEEELEEKENLLQQGFTIWNKRDFNQFIKANEKWG
RDDIENIAREVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGESRIQRRISIKKAL
DSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYDELRQCIRNSP
QFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEREKAEKKKRGPKGGSAQKRKAEGT
PDGRGRRKKLKL
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagagcgctgagtgcgtggagccgcgggaagagccggcggagcctgaagaagcc
gcagcagcagaggagaagtctgactcttcagatgctggaaaagagtcttcttcagaggca
ggtcctgacggacaagatgcatcctcctcaccaaccaaagagtcttctgcaggttatgag
gagaaagtgcaaacagaccggaccaacagatttgagtatctgttgaagcaaacagagttg
tttgctcatttcatccaaccggctgcacagaagactcccacatcccctcttaagatgaaa
cctggacgccctcggatcaagaaagatgagaaacagaacctgctctctgctggagacaac
cgtcaccgtcgcacagagcaagaggaggatgaagaacttctgaatgagagcacaaagacc
actaatgtgtgcactcgctttgatgactctccatcttatgtaaaatcaggaaaaatgagg
gattatcaggtccgtggtctgaactggctgatttctttgtatgagaatggaatcaatggt
atccttgcagatgagatgggactgggaaagactctccaaaccatctccctgctgggttac
atgaagcattacagaaatattcccggtccccacatggtgctggttcccaagtccaccctc
tacaactggatgaacgagttcaagcgatgggtgccctcacttcgtgcagtctgtctgatt
ggagacagaaatgagaggaacgccctggtcagagatgtgctgctgcctggagagtgggat
gtgtgcgtgacgtcctatgaaatgctcatcattgaaaaggccgtgttcaaaaagttcaac
tggagatacttagtcattgacgaagctcacaggatcaagaatgagaagtcaaagctatca
gaaattgtgcgtgaatttaaaaccaccaatcgcctacttttgaccggtacgccacttcaa
aataaccttcacgaactttgggctctgctcaacttcctgctgcctgatgtcttcaattca
gcagaggattttgattcgtggtttgacacaaacaactgcttgggtgatacgaaactggtt
gaacgtcttcacactgtgctgcgcccttttttgctccgacgtatcaaagcggatgtagag
aagactctgctgccaaagaaagagatcaagatatatgtgggcctgagtaagatgcagcga
gagtggtacacaaagattctgatgaaggacattgacattctgaactctgcgggtaaaacg
gacaagatgcgtttgctgaacgttctcatgcagctgaggaaatgctgcaaccacccgtac
ctattcgacggggccgagcctggcccaccttacacaactgacctccacctggcggtgaac
agtggcaagatgatggtgctggacaagctgctgcccaagatgaaagtgcagggttcacgt
atacttatcttcagtcagatgaccagggtgctggacatcttggaagactactgcatgtgg
aggaactatgagtattgccgcttggacggacagacgccacacgaggagagacagatctcc
atcaatgcgtacaacgaacccaacagctccaagttcatcttcatgctgagcacgagggct
ggtggcctgggcatcaacctggctactgctgatgtcgtcatcctctacgactctgactgg
aacccccaagtggacctgcaggctatggaccgagctcacaggattggtcagcagaagcag
gtacgagttttccgtttcatcactgaaaacaccgtggaggagaggattgtggagagggcc
gagatgaaactccgcctggactctattgtcattcagcaaggacgactcgtggatccaagt
gcaaacaagataggtaaggatgagatgttgtccatcatccgccacggtgcgacgcatgtg
tttgcttccaaggacagtgagatcacagatgatgacattgatcaaattctggagcgagga
gaaaggaagacaatggagatgaaggagaaactgtcatctctgggtgagagcactctcaga
aacttcaccatggacacggagaacagcagcgtgtacacatttgaaggagaggactacaga
gagaagaaaaaggtcattacgaactggatcgagccacccaagagagaacggaaagccaat
tatgccgtggacgcctactttagagaagctctgcgagtcagtgagcccaaagcgcccaag
gctcctcgtcctcccaagcaaccaaatgtccaagactttcagttcttccctcctcggcta
tttgagcttctagaaaaggaaattttgttctacagaaaaacaataggatacaaggttcct
cgtaatccggagctaccaaactcagctacagttcagaaagaggagcagggcaagatcgat
gaggccgaggctctgacggaggaagaactggaggagaaggaaaaccttctgcaacaagga
tttactatttggaacaaacgggacttcaaccagttcatcaaagccaatgagaagtggggg
agagatgacattgaaaacattgccagagaagttgaggggaaaactccagaagaagtcatg
gaatattctgctgtattctgggaacgctgcaatgagttgcaggatattgaaaagatcatg
gcccagatagagagaggcgaatccaggattcagagaaggatcagcatcaagaaagctctg
gactcaaagatcggtcgctacaaggctcccttccatcagctcagaatctcttatggcacc
aacaaaggcaagaactacacagaggaagaggaccgtttcctcatctgcatgcttcacaaa
ctgggcttcgataaagagagcgtgtacgatgagcttcgtcagtgcatccgcaactcgcct
cagttccgcttcgactggttcctcaaatccagaactgccatggagctccagaggcgatgt
aacactctgatcacactgatagagagagagaacatggagctggaggagagagagaaggca
gagaagaagaagcgcggaccaaaggggggctcagcgcagaaacgaaaggcagaaggaact
ccagatggtcggggtcgcagaaaaaagctgaaattgtaa
DBGET
integrated database retrieval system
