Cololabis saira (Pacific saury): 133441510
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Entry
133441510 CDS
T09849
Symbol
hif1al
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha, like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04137
Mitophagy - animal
csai04140
Autophagy - animal
csai04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
133441510 (hif1al)
04137 Mitophagy - animal
133441510 (hif1al)
04148 Efferocytosis
133441510 (hif1al)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csai03000
]
133441510 (hif1al)
Transcription factors [BR:
csai03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
133441510 (hif1al)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
HIF-1
PAS
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
133441510
NCBI-ProteinID:
XP_061574861
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All DBs
Position
4:complement(12090384..12126725)
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AA seq
662 aa
AA seq
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MEKDEENMAVKRTSSEQRKLRSRDAARCRRSQETEVFYELARTLPLPRRVCTHLDKAGIM
RVTLSFLRMQQILRPDGEEKEEEEKVVEEEVEEEKDEDPMDAFYPQALAGFIMVMTEEGD
MIFLTENVNKHIGITQLELLGQSIFDFVHPCDQEELRDLLTPRPGLSKKSLAEQPSERSF
FLRMKSTLTTRGRTVNIKSATWKVLHCTGHIRPFGGSSPSATVMTLLCEPIPHPSSVEFP
LDTCTFLSRHSMDLRFTHCEGRVTELTGYQPEDLIGRSAYEFYHALDSDPIKKSLHTLLT
KGQVNTSQYRFLANGGGFVWAETQATVLYSSKTSQPEAIVCLNYILSAVEQPDVVFSVEQ
TRCKRLPKAEPVSPGRCGLSDPPEGLDASGAAQLFLKLKEKADELLQLAPSAGDAVVLLT
GPVELSFVSPLSPAAVPEHPQDLCTPQLRELLSPIFDMATPSSSRVSSPEPPLCASEDDM
DVTEVEKFFASCPEDGQKKKETLELSSALAQDMEGMDLDMLAPYISMDDDFQLTFLGGLP
EDMDKPLPPPSPSESSAAPRRKRTHDLDEEMPPQLRLEDKRQKQSPSSIEEELLLSHKLL
GSLEETDQSDLLLDPGPVHSQLLTDRDPVLGGMQGLCDTAALMRDIFVPRPGDLSPPLSP
MT
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagatgaggagaatatggcggtgaaacggaccagctcggagcagaggaagctg
cgctcccgtgacgcggccagatgtcggcgcagccaggagacggaggtgttttacgagctc
gcccggaccctgccgctcccccgcagagtctgcacccacctggacaaagccggcatcatg
agggtgaccctcagcttcctgcggatgcagcagatcctgcgacccgatggagaagaaaaa
gaagaagaagaaaaagtagtagaagaggaggtggaggaggagaaagacgaggacccgatg
gacgccttctatcctcaggcgctggctggcttcatcatggtgatgactgaggagggggac
atgatcttcctgacggagaacgtcaacaaacacatcggcatcacgcagctggagctgctg
ggtcagagcatctttgactttgtccatccctgtgaccaggaggagctcagagacctgctg
actccacgtccaggtttgagtaagaaatctctggcggagcagccgagcgagaggagcttc
ttcctgaggatgaagagcacgctgaccaccagggggcgcaccgtcaacatcaagtctgcc
acctggaaggtgctccactgcaccggtcacatccgtccgttcggcggctcctcgccctcc
gccacggtgatgacgctgctgtgcgagcccatccctcacccgtccagcgtggagttcccc
ctggacacctgcaccttcctgagccgccacagcatggacctgcgcttcacgcactgcgag
ggcagggttacggagctgaccgggtaccagccggaggatctgattggacgctcggcctac
gagttttaccacgcccttgactccgaccccatcaagaagagcctgcacacactgttgacc
aaaggtcaggtgaacaccagccagtaccgcttcctggccaacggcggcggcttcgtctgg
gccgagactcaggccacggtgctctacagcagcaagacgtcgcagcccgaagccatcgtc
tgcctcaactacatcctcagcgctgtggagcagccagacgtggtgttctctgtggagcag
acccgctgcaagcgcctgcctaaggctgagcccgtgtcgccagggcgctgcgggctctct
gacccccccgagggtctggacgccagcggcgctgcacagctcttcctgaagctgaaggag
aaggccgacgagcttctccagctggctccgtcggccggagacgccgtcgtactgctgaca
ggtccggtggagctgtcgttcgtcagccccctcagtcccgccgcggtgccagagcacccc
caggacctgtgcaccccccagctgagggagctgctctcccccatcttcgacatggccacc
ccctcctcttcccgcgtctcctcccccgagccgccgctgtgtgccagcgaggacgacatg
gacgtcaccgaggtggagaagttctttgcttcgtgtccagaagatggtcagaagaaaaaa
gaaacactggagctgtcttcggctctcgctcaggacatggaggggatggacctggacatg
ttggctccctacatctccatggacgacgacttccagctcaccttcctcggcggtctgccg
gaggacatggacaagcctctgccccccccgtccccgtctgagagctccgcagcgcccagg
aggaaacggactcacgacctggatgaagaaatgccgcctcagctgaggcttgaggacaag
agacagaaacaaagtccttcctcaatcgaagaggaacttcttctcagccacaaactgctg
ggttctctggaggaaaccgaccagtcggacctgctgctggacccgggcccggtgcacagc
cagctgctgacggacagagaccccgtgttgggaggcatgcagggtctgtgtgacaccgca
gctctgatgagggacatcttcgtccctcgaccaggtgacctgtcccctcctctctcgccc
atgacctga
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