Cololabis saira (Pacific saury): 133441717
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Entry
133441717 CDS
T09849
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
133441717 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csai04131
]
133441717 (scarf1)
Membrane trafficking [BR:
csai04131
]
Endocytosis
Phagocytosis
Scavenger receptors
133441717 (scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_2
EGF_PEAR1L
EGF_C8A_B_C6
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
133441717
NCBI-ProteinID:
XP_061575281
LinkDB
All DBs
Position
4:complement(27495270..27506386)
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AA seq
911 aa
AA seq
DB search
MNVLRALSALLCCSLSSAHTLDPGGKNVCKNTRDASTVVCCAGWRQEGKECTIPVCEGEQ
ACLDNEICVFPGVCRCPPGYYGAQCKTRCPPDFWAPDCRQVCQCYPYGRCHPATGACTCN
SNRWGPLCQDTCKCARHGHCHPVHGNCTCDEGWWMPTCTKQCLCAGGSVSSSCDQLTGWC
QCHRGHWGPKCRLKCQCNQSPCNQQTGMCECVEGSWGQSCEKKCNCDLTHSSCHPVTGQC
LCHPGYQGVLCNQPCEARKYGSGCKMSCGSCKDNQPCSTTDGVCVACEPGWNGTRCDRRC
QSGFYGDGCKHKCPRCRNNEPCDHKTGDCWRCDPGWTGPRCEEVCPDRTYGDSCSFPCSP
CLHGDCHHVTGRCVCQAGFQGESCNSSCPALQFGLNCSSVCDCGERVICHPVTGVCPNSV
RGAVLAGVLVPLLLLLLAILCCCLCCGGGPADPKDRAAVADGGLLVRMKYHVYTVLANIG
AALPCISDWSSGLPRVTVSHHDPELTFNHSFIEPPSSNWVTEGSSFDTDEEAGEALYCVP
PREDIPAVAGGEFQEMSSKCNMFLDPTGFSSDDIASAFSIPRTSSIAKSKRPSVSFAEGT
RFSPKERRGSGQDHAVVSRSKAKSPWSALMLSTLHNQGGSARTGEQDGEEDEETEAYADV
QVADNQESSCEAAEQEADRTPSGSSLQVPGSAGRRRTMSNAAGHKGNKLPAPDAEVGVSH
KVTTVYVTVGKAGKPFTKTDSGSEGPVQAMLRRLGSLQRQKEQDSNKQKSKAVEGITKPP
RRKLGARATVWEKGGPSEEEAVVFKPIRRKHSSHNTSETNGTDNAPTPEGSTAKRPLSSI
LKSMPEVAAAALDSDSRAEGDRRQGGDASTGQTEGGYLTVGPAGDATEIITNEGAVVNVG
DEPCYENVYIK
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgaatgttctcagagctctgagtgctttgctctgctgctcactgtcgtctgcacacaca
ctggatcctggtgggaagaacgtctgcaagaacacaagggacgcatccacggtggtctgt
tgtgctggatggcgtcaggaaggaaaagagtgcaccatacctgtctgtgaaggggagcag
gcctgtctagataatgagatctgtgtatttcctggagtgtgtcgctgtccacctggctac
tatggagctcagtgtaaaacacgctgcccgcctgacttctgggccccagactgccggcaa
gtgtgtcagtgctacccatatggacgttgtcatcccgccactggtgcctgtacctgcaac
agcaaccgctggggtcctctttgtcaggacacctgcaagtgcgcccgccacggccattgc
caccccgtccacggaaactgcacctgcgacgaaggctggtggatgccaacctgcaccaag
caatgcctgtgtgcggggggatctgtgagctctagctgcgaccagctaacaggctggtgt
cagtgtcacaggggccactggggcccaaaatgtcgcctcaagtgccagtgcaaccagtct
ccttgtaatcagcagactggtatgtgcgagtgcgtggaaggctcatggggacaaagctgt
gagaagaaatgtaactgcgacctcacgcacagtagctgtcacccggtcactggtcaatgc
ctgtgtcaccccgggtaccagggcgtcttatgcaaccagccctgtgaagccaggaagtac
gggagtgggtgtaagatgagttgtggtagctgtaaagacaaccagccgtgctccaccact
gatggtgtgtgtgttgcctgtgagcccggctggaacggtacgcgatgtgaccgccggtgc
cagtccggtttttatggtgacggctgcaaacataagtgtccccgatgccggaataatgaa
ccctgtgatcataaaacaggggattgttggaggtgtgaccctggatggaccggacccaga
tgtgaggaggtctgccctgacaggacgtacggagactcctgcagcttcccgtgtagccct
tgtctccatggcgactgccaccatgtgacaggaagatgtgtctgtcaggcaggcttccag
ggagagagctgtaacagcagctgcccggccctgcagtttggcctcaactgctcgtctgtc
tgtgactgtggggagagagtcatctgccaccccgtcactggtgtttgccccaacagtgtt
cgcggtgctgtgctcgcaggtgtgctggtccctttgctcctgctgcttcttgctatactg
tgctgctgtctctgttgtggaggagggcctgctgatcccaaagacagagcggctgtggct
gacggaggcttgttggttcgcatgaagtatcacgtctacaccgtcctggcaaacattggc
gctgccctgccctgcatctctgactggtcttctggcttgcctcgagtcactgtttctcac
catgacccagagctgacctttaaccacagcttcattgagcctccctcctctaactgggtg
acagaggggtcgtcttttgacactgatgaggaggcaggagaggctctctactgcgtccct
ccaagagaagacatcccggctgtggcggggggcgagttccaggagatgagctccaagtgc
aacatgttcctcgacccaacgggcttcagcagcgacgacattgcctcagccttcagtatc
ccccgcacgtccagcatcgccaagtccaagcgaccgtctgtctcctttgcagaaggcacc
cgcttcagccccaaagagaggcgcggctctggtcaggaccacgcggttgtctcacgcagc
aaagctaagtcaccctggagcgccttgatgctttccaccctccacaatcagggaggctcg
gctagaactggggaacaggatggagaggaagacgaggagacagaagcttatgcggatgtt
caagtggcagacaatcaggaatccagctgtgaggcagctgaacaggaagcagacagaacc
ccatctggatcctccttgcaggttcctgggtcggcaggtcgaagacgtaccatgtccaac
gcagccggtcataaagggaacaagcttccagctcctgatgctgaggtgggggtctcgcac
aaggtcaccacagtgtacgtgacagtgggtaaggctggcaagcccttcacaaagacagac
tcgggctccgaggggccggttcaggccatgctgcgaagactcggcagcctgcagagacaa
aaggagcaggactctaacaagcaaaagtctaaagcagtggaagggatcacaaaaccaccc
aggcggaagctgggagctcgggcaactgtgtgggagaagggggggccgtctgaagaggag
gccgtggtatttaagcccatcaggaggaagcactcttcccataacacctctgaaactaat
ggaactgataatgctccaacaccagagggcagcacagcaaaacgcccactctcatccatc
ttgaagagcatgccggaggtggccgcagctgccttggactcagactcgagggcggaggga
gacaggaggcagggtggggatgcaagcacaggacaaacagagggcggttacctgactgtg
ggaccagcaggagacgccactgagatcatcactaacgaaggagcagtggtgaacgtgggg
gatgaaccctgctatgaaaatgtctatatcaaataa
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