Cololabis saira (Pacific saury): 133441742
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Entry
133441742 CDS
T09849
Symbol
arhgef12a
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04270
Vascular smooth muscle contraction
csai04625
C-type lectin receptor signaling pathway
csai04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
133441742 (arhgef12a)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
133441742 (arhgef12a)
09153 Circulatory system
04270 Vascular smooth muscle contraction
133441742 (arhgef12a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csai04131
]
133441742 (arhgef12a)
Membrane trafficking [BR:
csai04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
133441742 (arhgef12a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PDZ_2
SOS1_NGEF_PH
HEPN_AbiU2
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
133441742
NCBI-ProteinID:
XP_061575326
LinkDB
All DBs
Position
4:complement(28914521..28977970)
Genome browser
AA seq
1438 aa
AA seq
DB search
MSDTQSSFTDRFNKKATRTSSILSKDHPPDRKPKSDKPSLPSNEFDPTEALVQKNSSSGV
LAEGKPESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKDNGAAMRAGVQTGDRIIKV
NGTLVTHSNHTEVVKLIKSGSYVALTVLGRPPGLAQIPLPEGEPDMLGVSVSSPSSPAAE
RPYSPQDRLSSSQSPWDENSSVCSQKPDILQRMSSKEQQELQAMKEEYSRNPSPKLLKDI
QEAKKHIPQLQGQLFKATGTTQEAIPGGDADDGNILEIERTLPPKGNNSTDLSWNSTPIS
RVFGAGSSENQGQRESYFPSPKSTPRNSFNSCHSPETEDTTDLNSLSPTTVSSPSSSRLV
SQIIGAEDDYFDSDHEQTNGQCNSFNSMEQLKSRPAHLAAFLHHVISQFDPAPVLCYLYA
DLFKQTNSKETRRVFMDLHTFFMDRGANLKVPVPESVSSDLDRRRTELIPEEINRQHVQT
LQDSLFPEIQKNLEDFRQKRSMGLTVAEVELARLDQERVRDRVTLERERSYAENIITKIE
DILLTTQTTEEEKCTTMQYVIYTYMKHLGVRVKEPRSLESKRVRISFITKMKKSSKTEKE
GDEKVKKNRFQSILGPQRWPSRIEAAAVSKAVDNRPRPQKQLSQPALGASDHMEAGRLRG
SQSSEGPELTHSLSVNSSSPSNATNNSDTSRDTDIGGTPTSGTPRLSDGPQPDPLDGLPY
PASHLDLYSLDQLQEDDREIDRVHEGTPKAIRRLEGLGAADVQSEDDQGTDSEHDPPNWQ
QLVGREVLAGLRPHEIKRQEVLYELFYTERAHVRMLRVLDNVFYQKLSKDTILPPADIKN
IFTNLEEVLQLHVSILEQMTAVRKRNDSSVIDQIGDDLLSWFSVGEEERIQQAVGTFCSN
QPFALEIIKTRQKKDSRFTSFIQEAESNRLCRRLQLKDIIPVEMQRLTKYPLLLDNIVKY
TDNSVEKEKVKQAAESCRKVLSHVNQAVKESEDKQRLEDYQRRLDLSSLKQSDNPMILEL
KNLDLTKKTMVHEGPLSWKVNKDKTIELYTLLLEDILVLLQKQDERLILKCHSKNLAGTA
DTKHIFSPIIKLNTVLVRSVATDNKSFFVLSMSDNGAQIYELMAPTVADQKTWQSLISQK
ADSTKVKPHSVIPLPQTDGERDGVEIISTGVSRLSRDLDRTSSTQSTDKETSPASRSVLQ
GSLPGRNPFEEVKADDEEEEGSFVDPDLPYQVTGDVREGNLFEAFPSRADEALKTLAALK
QVLVTQLMSQEAAKQNKRSTGARLLRTTSLRTPIDSRAKVMVHNGSEKSSCQTEDLTQDM
GSGDTGFFDTPEDYGCLVLEGYGGLGESTTDDEILTSATGKQLSTSQGCAADSGINLRFS
SASQAGSLSTFSRQVLSHLRNLQANLNYLKDVETKYNNQIRQRSERSAADTDGNKDKR
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacacacagtccagcttcactgacaggtttaacaagaaagcaaccagaaccagc
agcattcttagtaaagaccatcccccagacaggaaacccaaaagtgacaaaccctcactt
ccctccaatgagtttgaccctacagaagctctggtgcagaagaacagcagcagcggtgtg
ttagcagaggggaagcccgagtcttgtggtctggtacagcgatgtgtaatcatccagaaa
gatgaaaatggtttcgggctcactgtcagtggtgacaacccagtgtttgtacagcttgtc
aaagacaatggggctgctatgcgggcaggtgttcagacaggagacaggattatcaaggtg
aacgggaccctggttacacattctaatcacactgaagtcgtcaagcttattaaatcgggc
tcctatgtggccctcacggttttggggcgccctccggggctggcccagatccctctgcca
gaaggagagcctgacatgttgggtgtaagcgtgtcctctccaagctctccagcagcagaa
cggccatacagtcctcaggaccgcctctcctcctcacaatcaccatgggatgaaaacagc
agtgtctgcagccagaagccagacatcttgcaaaggatgtcttcaaaagagcagcaggag
ctgcaggccatgaaggaggagtacagcaggaacccctcccccaaactactgaaagacatc
caggaagctaaaaaacacattcctcagctgcagggccagctctttaaggccactgggaca
acacaggaggctattccaggtggtgatgcagatgatggtaacatattggagatagagcgc
acacttccccctaaaggaaacaacagcacagacctgtcatggaacagtactcctatatct
cgcgtgttcggggccggatcttcagagaaccagggtcagagagagtcgtacttccccagc
ccaaagagcacacccaggaacagtttcaactcctgccactcaccagagacagaggatacc
actgacctgaactctctgtctcccaccaccgtcagcagtccctcctcttctcgcctcgtc
tcacaaattattggagctgaagacgactattttgattcagaccatgagcagacaaatggc
cagtgtaacagctttaacagtatggaacaactcaaatctcgccctgcccacctggcagcc
tttctgcatcatgtcatttctcagttcgaccctgctcctgtgctctgctacctctacgct
gacctgtttaagcagaccaactccaaagagactagacgggtgttcatggaccttcacacc
ttctttatggaccggggagcaaatttaaaagttcctgtccctgaatctgtgtcttctgat
cttgatcggcggcggacagaactaattccagaggaaataaacaggcagcatgttcaaaca
ctgcaggactccctgttccctgagattcagaaaaaccttgaggacttcagacaaaagcgc
agtatgggcttaacagtggctgaagtggagctggccagactggaccaggagagggtcaga
gaccgtgtcaccctcgagagggaacggtcatatgctgaaaacatcatcaccaagatagaa
gatatcctgctaactactcagaccacggaggaagagaaatgcactacaatgcagtatgtt
atctatacatacatgaagcaccttggggtgagggtcaaggaacctcgcagtttggagtct
aaacgggttcggatcagctttatcactaaaatgaagaaaagcagtaaaacagaaaaggaa
ggagacgagaaagttaagaaaaacaggtttcaaagtattcttggacctcagcgttggccc
agccgcatcgaagcagcagcagtgagtaaagctgtggacaatcgcccccggcctcagaaa
caattgtctcagcctgcattgggggctagtgaccacatggaagctggtcgtcttaggggc
agccaatccagtgaaggtcctgaactcacacactctttatccgtgaacagttcttctcca
agcaacgccaccaacaactctgacacaagccgagacactgatattggtgggactccaaca
tcaggcacccccaggctgagtgatggtcctcagcctgaccctttggatgggttgccatat
cctgcttcacacttggacctgtatagcttggaccagttacaagaggatgacagagaaatt
gacagagttcatgaaggaacaccaaaggccattagaagacttgaaggattgggtgctgct
gatgtccagagtgaagatgaccaagggacagactctgagcatgatcccccaaattggcag
cagctggtaggacgagaagtgcttgcaggtctaaggcctcatgaaatcaagagacaggaa
gtactgtatgagttgttttatacggagcgtgcgcatgtgcggatgctgagagttttggac
aacgtattttaccagaagctctccaaagatacaatccttcctcctgctgacatcaaaaac
atcttcaccaacctggaagaggttcttcagctgcatgtttcaatacttgagcaaatgaca
gctgttcggaagagaaatgactcttcagtaatcgatcagattggagatgacttgctgtcc
tggttcagtgttggagaagaagagaggatccagcaggcagtggggacattttgcagtaac
cagccttttgctctggagatcatcaagaccaggcagaagaaagactcaagattcacttcg
ttcatccaggaggcagagagtaacagactgtgccgccgcctgcagcttaaagacatcatt
ccagtagagatgcaacggctcaccaagtaccccctgctactagacaacatcgtcaagtac
acagacaattcagtggagaaggagaaagtgaaacaggcagcagaaagctgcaggaaggtc
ctcagtcacgtcaaccaggctgtgaaggaatctgaggacaagcagaggttagaggactat
cagagaagactggacctctcctctctaaagcagtcagacaaccccatgatccttgagcta
aagaacctggatctaaccaagaagacgatggtgcacgagggccccctgtcatggaaagtg
aacaaagacaagactattgagttgtacacgctcctactggaggacattctcgttctgctg
cagaaacaagacgagcgtctgatcctcaagtgtcacagtaaaaacctggcaggcactgcc
gataccaaacatatcttcagcccaattatcaagctcaacactgtactagtgcgttctgtg
gctacagacaacaagtccttctttgtcctctccatgtcagacaacggtgcccagatctat
gagctaatggcacccacagttgcagatcaaaaaacgtggcagagtctgatctcccagaaa
gcagattctacaaaagtcaagcctcacagcgtcatacctttaccccagactgacggggag
agagatggtgtcgaaatcatatcaacaggggtttccaggctgagtagagacctcgatcgc
accagcagtacacagtccacagataaagagaccagtccagcctcaagaagtgtattgcag
ggttctctacctggtaggaatccgtttgaggaagtgaaggcagatgacgaggaggaagag
ggcagcttcgtggaccctgaccttccttaccaagtgactggtgatgttagagaaggaaac
ctgttcgaagcgtttccctccagagcagatgaagcactgaaaacattggcagcattgaag
caggtgttggtgacacagcttatgtcccaggaggcagcaaaacaaaacaaacgctccacg
ggggcccgtctcctaaggaccacatctctgcggaccccgatagacagccgtgcaaaggtg
atggtccacaacggctccgagaaaagcagctgccagacggaggacctgactcaagacatg
ggatctggggacactggcttctttgacacacccgaagattatggatgtttagttctggag
ggttatggtggcctaggagagagcaccacagacgatgaaatcttgacatcagccacaggc
aaacagctgagcacctcgcaaggctgcgccgccgactccggcatcaatctgaggttttcc
tcagcatcacaggctggcagcctttccactttcagcagacaggtgctgtctcaccttaga
aatcttcaggcaaacctcaactatctgaaggatgttgagaccaagtacaataatcaaata
cgccaaaggtcagagaggtcagcagcagatacggatggaaataaagacaagagatag
DBGET
integrated database retrieval system
