Cololabis saira (Pacific saury): 133441870
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Entry
133441870 CDS
T09849
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03030
DNA replication
csai03420
Nucleotide excision repair
csai03430
Mismatch repair
csai03440
Homologous recombination
csai03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133441870 (rpa1)
03420 Nucleotide excision repair
133441870 (rpa1)
03430 Mismatch repair
133441870 (rpa1)
03440 Homologous recombination
133441870 (rpa1)
03460 Fanconi anemia pathway
133441870 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csai03000
]
133441870 (rpa1)
03032 DNA replication proteins [BR:
csai03032
]
133441870 (rpa1)
03400 DNA repair and recombination proteins [BR:
csai03400
]
133441870 (rpa1)
Transcription factors [BR:
csai03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
133441870 (rpa1)
DNA replication proteins [BR:
csai03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
133441870 (rpa1)
DNA repair and recombination proteins [BR:
csai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
133441870 (rpa1)
MMR (mismatch excision repair)
133441870 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
133441870 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
133441870
NCBI-ProteinID:
XP_061575582
LinkDB
All DBs
Position
4:complement(35601685..35627279)
Genome browser
AA seq
598 aa
AA seq
DB search
MTKLTEGAIEALASGSGGNEAVLQLVNIRKIDGGSGLARFRVMMSDGRHTLSSFMLSTQL
NCMAEENVLAQNCICVLKRHVTNVLKDGRRVVIILEIEVIKSADEVGNRIGDPTPFTEGQ
SKGPQSAPAPEIRPPLQTQNRNEVSRGFNIGKKAPSALPNTPGGSSKVVPIASLNPYQSK
WTIRARITNKSSIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNQEVDKFFTLIEVGKVYY
ISKGSLKIANKQYTSLKNDYEMTLNGESSIIPCDDSSDVPMMQCDFVSIGDLESREKDAV
VDVIGVCKSVDELTRLTTKTNREVSKRTLSLMDMSGKLVSVTLWGEEAEKFDGSGQPILA
IKGAKLSDFGGRSLSASFSSTVMINPDIPEAYKLRGWYDKEGHAMDGQSLTELKGGSGGG
NTNWKTLADVKNEHLGHGDKADYYTCIGTIVYLRKENCLYQACPSQDCNKKVVDQHNGMY
RCEKCDKEFPNFKHRLILSANIADYQDNQWVTCFQESAEAILGQNAAYLGQLKDSNETAF
DEIFQQANFNTFVFRNRVKLETYNDESRIKATVMDVKPVDHKDYSKRLIVNIRKLAVQ
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaacttacagaaggcgcgatcgaggctctggccagtggttccggtggaaacgag
gcagtgcttcagttggtgaacattcgcaagattgatggagggagtggacttgctcgattt
cgggtgatgatgagtgatggacggcatacattgtcctccttcatgctctccacccagctg
aactgcatggctgaagaaaacgtcttggcccaaaactgcatctgtgttctcaagaggcat
gtgactaatgtgctgaaggatggaagacgagtcgtaatcattttggaaattgaagtcatc
aagtctgctgatgaagttggaaatagaataggagaccctactccgttcaccgagggtcaa
agtaaaggcccacaatcagctccagcccctgaaatcagacctccactgcaaactcaaaat
agaaatgaagtgagcagaggtttcaacattgggaagaaagctccatctgctctgcccaat
actccggggggcagctccaaagttgtgcccattgccagcctcaacccttatcagtctaag
tggacaatccgtgcacgaatcaccaacaagagttccattcgcacgtggagcaactcccgg
ggtgatggcaaactcttctccatggagatcgtagatgagagtggagaaatcagagtgact
ggtttcaaccaggaagttgacaagttcttcactctcattgaggttggcaaggtctactac
atctccaagggctccttaaagatcgccaacaagcagtacacatcattgaagaatgactat
gagatgacgctcaacggagagtcctccatcatcccctgtgacgacagcagtgacgttccc
atgatgcaatgtgactttgtctccattggtgacttggagagcagagagaaagatgccgtt
gttgatgtgattggtgtgtgcaagagtgtggacgagctgacccgcctcaccaccaagacc
aaccgtgaagtttctaagaggacactaagtctgatggacatgtctgggaagttggtttct
gtcacgctgtggggagaggaggcagaaaagtttgatggctctggacagcctattcttgcc
attaagggtgccaagctgtcagacttcggaggccggtcgctgtcggcatccttcagcagc
accgtgatgatcaacccggatatccctgaggcatataaactcagaggctggtacgacaag
gaaggccacgctatggacggacagtctctgacagagttgaaagggggcagcgggggagga
aacaccaactggaagactctggctgatgttaaaaatgagcatctgggacacggagacaag
gcggactactacacctgcataggtaccatcgtatatctgcgcaaagagaattgcctttac
caggcctgtccaagccaagactgcaacaaaaaagtggttgaccagcataatggcatgtac
cgctgtgagaagtgtgataaagagtttcccaacttcaagcaccgcctcattctctccgcc
aacattgcagattatcaggacaatcagtgggtgacttgcttccaggagagtgcggaggcc
atcctgggtcagaatgcagcttacctggggcagctcaaggactcgaatgagactgcgttt
gatgagattttccagcaagccaacttcaacacttttgtcttccgcaaccgagtgaagctg
gaaacgtataatgatgaatccaggattaaggctaccgtgatggacgtgaagcccgtcgac
cacaaagactacagtaaaaggctcatcgtgaacataaggaaactggccgtccagtaa
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