Cololabis saira (Pacific saury): 133441907
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Entry
133441907 CDS
T09849
Symbol
robo1
Name
(RefSeq) roundabout homolog 1 isoform X1
KO
K06753
roundabout, axon guidance receptor 1
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
133441907 (robo1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
csai04515
]
133441907 (robo1)
Cell adhesion molecules [BR:
csai04515
]
Immunoglobulin superfamily
ROBO family
133441907 (robo1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
ig
fn3
V-set
C2-set_2
Pur_ac_phosph_N
FN3_DSCAM-DSCAML_C
Ig_PDGFR_d4
Unc5_NetrinR_N
Motif
Other DBs
NCBI-GeneID:
133441907
NCBI-ProteinID:
XP_061575641
LinkDB
All DBs
Position
4:37089476..37319402
Genome browser
AA seq
1710 aa
AA seq
DB search
MRAPEAGMAGGRMPLLLLVLLVEVLSGACVPGEGSGKHKGSWRWKGDRSKTGVAHDGASD
GATAAPTSEHEDDNTLGYTGSRLRQEDTPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPT
VEWYKDGERVETDKDNPRSQRMLLPSGSLFFLRIVHGRRSKPDEGSYVCVARNYLGEAVS
HNASLEVALLRDDFRQNPADVIVAAGEPAVLECQPPRGHPEPTISWKKDGINIDDRDERI
TRRGGKLMITNARKSDAGKYVCVGTNMVGERESEIAELTVLERPSFVRRPGSQVMLVDQS
VEYRCEARGDPVPTVRWRKDDGELPKGRYEIREDHTLKIRRLISADVGSYTCVAENMVGK
AEASATLTVHVPPAFAVRPRNQVVGVGRTVTFQCEATGNPQPAIFWQREGSQNLLFSSQP
PQPSSRFSVSQTGDLTITDAERSDVGYYSCQALNIAGSVITKALLEVTDVVSDRPPPVIR
QGPTNQTVAVDGTVVLNCVTSGNPTPTILWRKDGVLVSTHDSRVKLLDTGALQIRYAKLS
DTGIYTCIASTPSGEASWKAFLEVQEFGNPVQPNRPTDPNLIPSAPSKPEVTDVTRTAVT
LSWKPNLNAGATPTSYIIEAFSHASGSSWQTLAEHVKTESFVLKGLRPSAVYLFLVRAAN
AYGLSDPSPITDAVKIQDVPPTSQGVDHRQIQRELGDVVVHLHNPTILSSSSVRVQWTAE
QQSPYIQGYKVMYRPSPEGHQRSEWAVFEVRTPGEDSALVTQLRKGVTYEFKVRPFFNEF
QGADSDVKIGKTLEEAPSAPPRKVSVTESGDNGTAIVVSWQPPPEEQQNGVVQEYKVWCL
GNESRYHINRTVDGSTLSVLIPSLAPGIRYSVEVAASTGAGPGVKSDITFFQLDSSGRMT
DSPDGENPLSQQISDVVKQPAFIAGIGAACWIILMVFSIWLYRHRKKRNGLSSSYAGIRK
VPSFTFTPTVAYQRGGEGVSSAGRPGLLNIGESATQPWLADTWPNSCSNHNDCSINCCTA
GNGNSDSNLATYSRPADCIANYNNQMENKQTNLMVPESGVYGDVDLSNKINEMKTFNSPN
LKDGRFVGPGGQPTPYATTQLIQSSIMGNNINSERGTGGSGGGLGGGGEVNEKHCWKPTS
VQQQKQELSSQLQYNIMEQNKLNKDRYRGGDSPMPATIPYNQTHDSHTGGSYNSSDRGSS
STSGSQGHKKGTRTPKLPKQSTMNWADLLPPPPANPPPSRSTEEYSLSMEDSCDPDMQCS
MPPSHMYLQPDELEEEEEMERGPTPPVRGAASSPAAVSYSHQSTATLTPSPQEEMQPMLQ
DPSNSHERRRHPMSPPPPPRPISPSHTYGYISSPLALDTDGMEEEDILEEEEDGDDTDAE
VAKMHYHHTHPHTHPHHPQMHARRLLLRGLEQTPASSMGDLESSVTGSMINGWGSASEED
NVSSGRSSAVSSSDGSFFTDADFAQAVAAAAEYSGLRVAKYPNSQGQEVGGASARKYQIN
QSGHRPSSPVSTDSNMSMAAIHRRPPKKLKQHPAAAHPGNQRREAFSEDLPPPPIPPPAV
LKSPTHPSKTALEGRGVISPKAAEGRDKRGGGMGGYRPQEASDARTSSSERRDAQERQKT
APAVKGSKHENSSANKPRQHPGSEDILPYSRPQFPTVNSTRDPSSSSSMSSKGSGGRRRG
EGGRRNPADMGLNSSAAFQPEDDELEMAES
NT seq
5133 nt
NT seq
+upstream
nt +downstream
nt
atgcgagcgccggaggcgggcatggccggcgggcggatgcccctgctcttgctggtgttg
ctggtggaggtgctgagtggagcctgtgtgccaggcgaaggctcagggaagcacaaggga
agctggaggtggaaaggtgacaggagcaagacgggagtcgctcatgatggtgccagcgac
ggggcaacagcagctcccacctccgaacatgaagatgacaacactttgggctacacagga
tctcgtctgcgccaagaggacaccccacccaggattgtagagcacccatcggacctgata
gtttccaaaggggagcccgccactctcaactgcaaagcggaagggcggccaaccccgact
gtggagtggtacaaggatggagaacgggtggaaacggacaaggacaatccccgctctcag
cgtatgctgctacccagcggctccctcttcttcctccgcattgtccacggacggcggagc
aaacccgatgaaggatcctacgtctgtgtcgctcgcaactacctgggagaggcagtgagc
cacaatgcctcgctggaagtagcccttcttcgtgacgacttcagacaaaaccctgcagat
gtgatcgtggcagctggagagcccgcagtcctggagtgccagcctcctcgcggacacccc
gaacccaccatatcctggaaaaaagatggcatcaatattgatgacagagatgaaaggatc
actagacgcggagggaagctgatgatcacaaatgcccgcaaaagcgacgctgggaagtac
gtctgtgtcggcacgaatatggttggagaacgtgaaagtgaaatagctgaactgacagtg
ctggaacgtcccagcttcgtgcgtcgccccggcagccaggtgatgttagtggaccaaagc
gtggagtacagatgtgaagcccgaggtgacccagttcccaccgtacgctggaggaaagat
gacggtgaactgcccaaaggaagatatgagatccgcgaggaccacaccctgaagatccgt
cgcctgatctcggcggacgtaggctcctacacctgcgtggccgaaaacatggtgggcaaa
gcggaggcatcggccacgctcaccgtccacgtgccccctgcgtttgcggttagaccaaga
aaccaggtggttggagttggcaggaccgtcaccttccagtgcgaggccactggaaaccca
caaccagccattttctggcaacgggaaggcagtcagaacctgctgttctcctcccaaccg
cctcaaccctccagccggttctccgtgtctcagaccggagacctgaccatcaccgatgcc
gagcgctcagacgtgggatactacagctgccaggccctcaacatcgctggaagcgtgatc
accaaagctctgctagaggtcactgacgtcgtttcggaccgcccgccaccggtaatacga
cagggtccgaccaatcagacggtggctgtggacggtactgtggtgctgaactgtgtgaca
tctggtaaccccacccccaccatcctgtggaggaaggacggtgtgttggtctccacacac
gactccagggtcaaactgttggacacaggtgcactgcagatacgctacgcaaagcttagt
gatacgggcatatacacctgcatagcctccacaccgagtggagaggcctcgtggaaagcc
tttctggaagtccaagaatttggaaacccagttcaaccaaacaggcctaccgacccaaac
ctgatccccagtgctccctccaagcccgaggttacggacgtcacccgcaccgccgtcact
ctctcatggaagcccaacctcaacgctggagccacacccacctcctacatcatcgaggcc
ttcagtcacgcatcggggagcagctggcagaccttggcagagcatgtgaaaacagagtca
ttcgtgctgaagggcctgaggcccagtgcagtctacctcttcctggtgcgagcagctaat
gcctacgggctgagtgatcccagtcccatcactgatgctgtgaaaatacaagatgtccct
cccaccagtcagggtgtggaccatcgtcagatccaaagggagttgggagacgtggtcgtc
cacctgcataaccccaccatcctttcctcctcgtctgttcgggtgcagtggacggcggag
cagcagtccccgtacatccagggctacaaggtgatgtacaggccctccccagagggacac
cagaggagcgagtgggctgtgtttgaggtgcggacccccggggaggacagcgccctcgtc
acgcagcttcggaagggcgtcacctacgaattcaaagtccgccccttcttcaacgagttc
cagggagcagacagcgacgtcaaaatcggaaagacgctggaggaagcccccagtgcccct
cctcggaaggtctcagtgacagagagtggagacaatgggactgccatcgtcgtctcctgg
caaccccctccagaggagcagcagaacggggtggtccaagagtacaaggtttggtgcctg
ggtaatgagagcaggtaccacatcaaccgaacagttgatggctcgaccctatccgtgctg
attcccagcctggcccccgggatccgctacagcgtggaggtagcagccagcacaggagca
gggcccggagtcaagagcgacatcaccttcttccagcttgattcgtctggacgaatgaca
gactccccggacggagaaaacccactgtcccagcagatctccgacgtagtaaagcagccg
gccttcatcgccggcatcggcgctgcttgctggatcatcctcatggtcttcagtatctgg
ttgtatcggcaccggaagaaaaggaacggcctgtccagcagctatgcaggtatacgcaaa
gtgccatctttcactttcaccccaacagttgcttatcagagaggtggggaaggcgtcagc
agtgctggaaggcccggtttgctaaacatcggagaatctgccactcagccctggctcgcc
gacacgtggcccaactcctgctccaaccacaacgactgcagcatcaactgctgcactgca
ggcaacggaaacagcgacagcaacttggcaacgtacagccgcccagccgactgtatcgcc
aattataacaaccagatggaaaacaaacagaccaacctcatggttcccgagtcgggagtt
tatggagatgtagacctgtccaacaagatcaatgagatgaagaccttcaacagcccgaac
cttaaagacggccgctttgtaggtccggggggccagcccacgccttacgccaccacccag
ctcatccagtcctccatcatgggcaacaacataaactcagagcgagggaccggagggagt
ggcggcggacttgggggtggaggggaagtgaatgagaaacactgctggaagcccacctcg
gtgcagcagcagaaacaagaactgagctcccagctgcagtacaacatcatggagcaaaac
aagctaaacaaggaccgctacagaggaggggacagtcccatgccggccaccatcccctac
aaccagactcacgacagccacaccgggggctcgtacaacagctctgaccgaggcagcagc
agcacctctggtagtcagggtcataagaaaggaacacgcacccccaaattacccaaacaa
agcacaatgaattgggctgaccttctgccccctcctccggcaaacccacccccaagtcga
agcacagaggagtactctctatcgatggaagacagctgtgatccagacatgcagtgctcc
atgcctccctctcacatgtacctgcagcctgatgagctggaggaggaagaggagatggag
agggggcccactcctcctgtccgcggggcagcctcttcccctgctgcagtatcctacagt
caccagtccacagctacacttaccccttcaccccaggaggagatgcagccgatgctgcag
gatccatcaaacagccatgaacggagacgccatcctatgagccccccaccccctccaaga
cccatctccccctcacacacatatgggtacatcagcagcccactagccttggacactgac
ggtatggaggaggaggatatactagaggaggaggaggacggtgatgacacagatgcagaa
gtggccaagatgcactaccaccacacccatccccacacacaccctcaccacccccagatg
catgcacgaaggctgctgctacgagggcttgaacagacgcctgcctccagcatgggggac
ttggagagctcagttactggctccatgatcaacggatggggctcggcctccgaggaggac
aatgtttcttcagggaggtccagcgcagtcagctcatcggatggatccttcttcacagat
gccgactttgcccaagccgtcgccgccgctgcagagtattcaggcctcagagtggcaaaa
taccccaactcacagggccaggaagtgggaggagcttcagcacgaaaataccaaataaac
cagtcgggtcaccgtccaagcagcccggtgtctacagacagtaatatgagtatggcagct
atacacaggaggcctccgaaaaagctaaaacagcaccctgcagcagctcacccgggaaac
cagcgacgtgaagccttcagcgaagatctccctccaccacccattccacccccagcagtg
ctcaagtctcccacacatccctccaagacagctttagagggtcggggagtcatttctccc
aaggcagcggaaggtcgagacaagcgaggaggaggaatgggcggctatcggccccaggag
gcctcagatgccagaaccagctcatctgaacgcagagacgcccaggagagacaaaagact
gccccggcagtgaaagggagtaaacatgagaatagcagtgccaacaagccacgtcagcac
ccaggctcagaggacattctgccctacagccgaccacagttccccacagtcaacagcacc
cgcgacccaagctcctccagttccatgtcctccaagggttcagggggccggcggagaggg
gaaggaggccgcaggaaccctgcagacatgggccttaacagctctgcagccttccaacca
gaagatgacgaactagagatggcagaaagctga
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integrated database retrieval system