Cololabis saira (Pacific saury): 133441965
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Entry
133441965 CDS
T09849
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133441965 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133441965 (ddx6)
03036 Chromosome and associated proteins [BR:
csai03036
]
133441965 (ddx6)
Enzymes [BR:
csai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133441965 (ddx6)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
133441965 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
133441965 (ddx6)
Chromosome and associated proteins [BR:
csai03036
]
Eukaryotic type
Gene silencing
piRNA pathway
133441965 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
133441965
NCBI-ProteinID:
XP_061575788
LinkDB
All DBs
Position
4:complement(41800484..41812374)
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AA seq
478 aa
AA seq
DB search
MSTARTENPVILGLSTQNGQLRGSVKPAGAPGGGGGGTQQLNQIKGTINGGSQPAPTNAV
IKPGDDWKKSLKLPPKDMRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEE
SIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDTIQAMVIVPTRELALQVSQICI
QVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVIIATPGRILDLIKKGVAKVNQVQMVVL
DEADKLLSQDFVLMMEEMLGFLAKQRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELT
LKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIH
AKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHRIGRS
GRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPGIIDKSLYVAEYHSETGEEIKP
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgccaggacggagaacccagtgattctggggttgtccacccagaacgggcag
ctgagaggctcggtgaagccggctggagccccgggtggaggtggagggggcactcagcag
ctgaaccagataaaaggcacaatcaacggcggttcccagccagccccgacaaatgctgtc
ataaagcctggagatgactggaagaaaagtttaaagttgcccccaaaagacatgaggatg
aaaacatcggatgtgactgcaactaaaggcaatgagtttgaagattattgcctaaagagg
gagctactaatgggaatctttgagatgggctgggaaaagccatctccaattcaggaggaa
agcattcccattgcactgtcaggaagggatattctggccagagccaagaatggcacggga
aagagtggagcctacctcattcccttacttgaacgcattgacctgaagaaggacactata
caagcaatggtcatagttcctactagagaactggcactgcaagtaagccaaatatgtatc
caagtcagcaaacacatgggtggagtgaaggtcatggcaaccacaggtggcaccaacctc
cgtgatgacatcatgagactcgatgaaacggtacatgtgattattgccactcctgggagg
attttggacctcatcaagaaaggggtggccaaagtcaatcaagtgcagatggttgttctg
gatgaagcagacaaactcctgtctcaggactttgtcctcatgatggaggagatgctgggc
ttcctggccaaacagaggcagattttgctgtattctgcaaccttcccgctcagtgtgcag
aagtttatgaattcacacttgcagaaaccctatgagatcaacctcatggaggagcttacg
ctgaagggcgtgactcagtattatgcctatgtaaccgaaaggcaaaaggtccattgcctt
aataccttattttccagactccagatcaaccagtcaataatcttctgcaactcctctcag
agagtggagctactcgccaagaagatctctcagcttggatattcatgcttctacattcat
gccaagatgagacaggagcaccgcaaccgggttttccatgacttcagaaatggcctatgc
cggaatctcgtctgcactgaccttttcacgagaggaattgacattcaagctgtgaatgtt
gtgatcaactttgatttccccaagctgggagaaacgtaccttcaccgcattggtagatct
ggacgctttggacacctcggtttagccatcaacctcatcacatacgatgatcgcttcaac
cttaaagggatcgaggagcagcttggaacagagatcaagcccatccctggcatcatcgac
aagagcttatacgtggccgagtaccacagtgagactggtgaagaaatcaagccatga
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