Cololabis saira (Pacific saury): 133441973
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Entry
133441973 CDS
T09849
Symbol
dhx34
Name
(RefSeq) probable ATP-dependent RNA helicase DHX34
KO
K20101
ATP-dependent RNA helicase DHX34 [EC:
5.6.2.6
]
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133441973 (dhx34)
Enzymes [BR:
csai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133441973 (dhx34)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
133441973 (dhx34)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2_DHX34
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
AAA_16
Motif
Other DBs
NCBI-GeneID:
133441973
NCBI-ProteinID:
XP_061575797
LinkDB
All DBs
Position
4:42254631..42268707
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AA seq
1147 aa
AA seq
DB search
MEPGGERGSPGWDWDSPRCRAQLDQIFFREHDYIQAGSPEHRDFWAFFDRFQRFRTRREV
SVARTGGTELRKAEKKTGKKVDLGLPEEYDARYKINVSVCTKDVEERLGKSDHRSRRSSS
GPGAQQVSDCRLALLHFLDFSQRQSFAKLAKLRQEQKNLPIYQYRDRIVELVRLNPVVVV
AGDTGCGKSTQVPQYLLSAGFNHVACTQPRRIACMSLAKRVSFESLNQYGSKVGYQIRFE
TSRTPATKLLFLTEGLLLRQIQKEKTLAQYEVVIVDEVHERHLHCDFLLGVLRSLLADRP
DLRLILMSATINIKLFSNYFNSAPVLQVPGRLFPIQVMYQPIPPEEQASRSEKLDPRPYL
RILQGIDQRYPPEERGDLLLFLSGVAEIATVQEACQVYATHTRRWIVLPLHSTLSIAQQD
KVFDISPPGVRKCIISTNIAETSVTIDGVRFVVDSGKVKEMSFDPKAKMQRLQEFWISRA
SSEQRKGRAGRTGPGVCYRLYAESDYNAFAPYPVPEIHRVALDSLILQMKSMGLGDPLSF
VFIDPPPAASIQTAVTYLREQGALDIRGELSYIGCLLAQLPVDVVIGKMLVLGSVFNLVE
PVLTVAAALSVQSPFLRSSQHNPDCATARQPLHSNQGDPFTLLNAFNAWVEVKGERGGGS
RKWCRRRGLEEQRLYEMVNLRRQFKDLLKSHSLLESEERAPSGGDRKHRRERFTEKRKLH
QLKRDHEQQEGSKRRVLRMDEGQNEDFSSGSDTEDKSKRKKGKGDTGQNLDIQEVKFKLR
HNVSELQESVSVSQDLSSRQQALLKLLLCRGLYPQLALADEHNSTRKDSEQVFHTRNKHG
VVIHPTSVFASDPEVLHVPEDDTREMGPERRDSTRHQLLAFVTLLETNKPYLSNCVRVPA
LQALLLVANSVDTNADCTRMVVDGWLELELREAEEALRALSTALTLRAEWERLLQAQLGQ
SSTEEAGAPAVSRRDMEKLSDGLVRFLLYNEICYSLQRLTAFQTQNLYIGPRCEKDPSHA
ETPDLNLLFPGAAAKPDPIKGGLRVTNFFTYNCLADSKDLYSECLRTFWSCQVCGLYMPL
TPLERMHHEATCKPASEEQQTQPVPEAGKAGSSSLTRVYHCDICNEDLNLTSTEILKHKR
QHTFSGK
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atggagcccggcggggagcgaggcagcccgggctgggactgggacagcccgcggtgtcga
gcccagctggaccagatcttcttccgcgagcacgactacatccaggccggcagtccggag
cacagggacttctgggctttcttcgaccgcttccagcggttccggacccggagggaggtg
tcggtggcccggacggggggcacggaactcaggaaagccgagaaaaagactgggaagaag
gtagatctgggtctgcctgaagagtatgacgcccgctacaagatcaacgtgtcagtctgc
accaaggacgtggaggagcggctggggaagtcggaccaccggagcaggcggagctcctcc
ggaccgggagcccagcaggtctccgactgccgcctggctctgctgcacttcctggacttc
agccagagacagagcttcgctaaactggccaagctgcgccaggagcagaagaacctgccc
atctaccagtaccgggaccggatagtggagctggtccggctgaacccggtggtggtggtc
gcgggggacacgggctgtggtaaatccacccaggtgccgcagtacctgctgtccgccggc
ttcaaccacgtcgcctgcacgcagcctcgccgcatcgcctgcatgtccctggccaagagg
gtcagcttcgagagcctcaaccagtacggctcaaaggtggggtatcagatccgttttgag
accagccgaacgccggccaccaaactgctgttcctgaccgaggggctgctgctccggcag
atccagaaggagaagacgctggctcagtacgaggtggtgattgtggacgaggtccacgag
cggcatcttcactgcgacttccttcttggcgtcctgcgctctctgctggccgaccgcccc
gacctgcgcctcatcctcatgtcggccaccatcaacattaaactcttctccaactacttt
aatagtgctcccgtgctgcaggtgccaggtagactgtttcctatccaggtcatgtaccag
cccatcccccccgaagagcaggcctcgcgctcggagaagctggatcccaggccgtacctc
cgcatcctgcagggcatcgatcagcgctaccctccggaggagcgcggagacctgctcctc
ttcctcagcggcgtcgccgagatcgccaccgttcaggaggcttgtcaggtttacgccacg
cacacacggcgctggatagtcttaccgctccacagcacgctctccatcgcccagcaggat
aaggtgtttgacatttctcctcctggtgtgagaaagtgcatcatctccaccaatattgca
gagacctcagttacgatagatggggtgcgctttgttgtggattcaggaaaggtgaaagaa
atgagttttgatcccaaagcgaagatgcaacgtctgcaagagttctggattagccgagcc
agttctgagcagaggaaaggtcgagccggccgcacgggtcccggtgtttgttaccggctc
tacgccgagtcggactacaacgcctttgctccgtatcctgtaccggaaatccacagagtg
gctctggactccctcattctccagatgaagagcatgggcctcggagatccactctctttt
gtttttatcgatccacctccagctgcgagtatccagacggcggttacatatctgagggaa
cagggagctctcgacatccggggggaactctcctatattggctgtttactggcacagctt
cctgtggatgtggtcataggtaagatgctggtgttgggttctgttttcaaccttgtggag
cccgtcttgacagtagcagcggccctcagcgttcagtcacccttcctacgtagctcccag
cacaacccagactgtgccaccgcccgccagcccctgcatagcaaccagggagaccccttt
accctactcaacgccttcaatgcctgggtggaggtgaaaggagagagaggtggtggctcc
agaaagtggtgcaggaggagaggcctggaggagcagcgtctatatgagatggtcaacctc
cgcagacagttcaaggacctgctgaagagccacagcctgctggagtcagaggaaagggct
ccctccggtggcgaccgtaagcaccgcagggagaggttcacggagaagagaaagctgcac
cagctgaagagagaccacgagcagcaggaggggagcaagcggagagtcctgaggatggac
gagggtcagaatgaagacttctcctcggggtcagacacggaggacaaaagcaaacgcaag
aagggaaagggggacacgggacagaacttggatatacaggaagtgaagttcaagttgcgt
cacaacgtgtcagagctccaggagtcggtgagcgtcagtcaggacttgtcctcgcgccag
caggctctgctcaagctgctgctctgccgaggtctttaccctcagctggctctggccgac
gagcacaactccacccgcaaggactcggagcaggtgtttcacacaagaaataagcacgga
gtggtgatccacccaaccagcgtgttcgcaagtgatccagaggtgctgcatgtgccggag
gacgacaccagagaaatggggcctgagaggagggacagcaccagacaccagctgctcgcc
ttcgtcaccctgttggagaccaacaagccgtatttgtccaactgcgtgcgggttccagcg
ctgcaggctctgctgctggtagcgaactctgtggacaccaacgctgactgtacgcggatg
gtggtggacggctggctggagctggagctgcgggaggcggaggaggccctcagggctctg
tccacggccctcaccctcagggcggagtgggagaggctgctgcaggcccagctgggacag
agctccacagaggaggccggagccccggccgtgtcccgcagagacatggagaagctgagc
gacggcctggtccgcttcctgctgtacaacgagatctgttacagcctgcagcgcctcaca
gcgttccagacccagaacctgtacatcggccctcggtgtgagaaggacccgtctcacgca
gaaactccagatctaaacctgctgtttcccggagcggcggccaaaccagaccccatcaaa
ggaggccttcgtgtgaccaacttcttcacttacaactgtctggctgattcaaaggacctt
tatagtgaatgtttgcgcacgttctggagctgtcaggtctgcggcctctacatgcctctg
acgccgctggagcgcatgcaccatgaagccacctgcaaacccgcctcagaagagcagcag
actcagccggtgccagaagctgggaaagcaggatcctccagtctcaccagagtctatcac
tgcgacatctgtaatgaagacctgaacctgacctccactgagatcctcaaacataaaaga
cagcacacgttttctgggaagtaa
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