Cololabis saira (Pacific saury): 133442048
Help
Entry
133442048 CDS
T09849
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
133442048 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csai03021
]
133442048 (supt5h)
03019 Messenger RNA biogenesis [BR:
csai03019
]
133442048 (supt5h)
Transcription machinery [BR:
csai03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
133442048 (supt5h)
RNA polymerase I system
133442048 (supt5h)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
133442048 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF150_C
DUF3912
Ribonuc_P_40
DUF6406
Motif
Other DBs
NCBI-GeneID:
133442048
NCBI-ProteinID:
XP_061575919
LinkDB
All DBs
Position
4:complement(46557115..46594895)
Genome browser
AA seq
1087 aa
AA seq
DB search
MSDSEDSDFSDNQSERSSDGEAEEDNEEETRSPVGSDKVAEEEGEDLDDEEEYDEEEEED
DDEERPRKKPKHGGFILDEADVDDEDDEEEQWGEGDEDILEKEEPEVSNMDHMVLDDDMS
GSRRLQNLWRDSREEALGEYYMRKYAKSSAGEHYSGGSEELSDDITQQQLLPGVKDPNLW
TVKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPDHVKGYIYVESYKQTHVKSAIE
GIGNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEPSQ
NTISLKMIPRIDLDRIKAKMSLKDWFAKRKKFKRPGQRLFDAEKIRSLGGEVSHDGDFMI
FEGNRYSRKGFLFKSFAMSAVITDGVKPTLSELEKFEDQPEGIDLEVVTESGKEREHNLQ
AGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHVKVI
AGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGELVQ
LDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVKDIVK
VIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVGG
FAPMSPRISSPMHHGGGGAQQRGGGGGGGGGGGGGGMGRGRGRRDNELIGQTVRICQGPY
KGYIGVVKDATESTARVELHSTCQTISVDRQRLTTMGAKRDAGMTSTHRRTPMYGSQTPM
YGTGSRTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPSNPNTPSRNDEEYD
FGFDDEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTEQYSPYTAPS
PQGSYQPSPSPQSYHQVVPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGA
PSPGGYNPHTPGSNIEQGSSDWVTTDILVRVKDSFMDLMGQMGVIRSVTGGMCSVFMQES
EKVVSISSDHLEPVTPTKNNKVKVILGEDREATGILLSIDGDDGIVRMELDDQLKILNLR
FLGRLEH
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacagcgaggacagcgacttctccgacaaccagagcgagaggagcagtgatggg
gaggcggaggaggacaacgaggaggagacacgaagtcccgtgggcagcgacaaagtagcg
gaggaggagggggaggacctggacgatgaggaggagtacgacgaggaagaggaggaggac
gacgacgaggagcggcccaggaagaagccgaagcacggaggcttcatcctggacgaagcc
gatgttgacgacgaagatgacgaagaggagcagtggggggaaggggacgaggacatcctg
gagaaagaagagccagaagtttccaacatggaccacatggttctggacgacgacatgtcg
gggtcccggcggctgcagaatctctggagagactccagggaggaggcgctgggtgaatac
tacatgaggaaatacgccaagtcttcagcaggagagcactactccggcggctcagaggag
ctctctgatgacatcacgcagcagcagcttctccccggggtcaaggatcccaatctgtgg
acggtcaagtgcaagatcggggaggagcgagcgacggccatcgccctcatgaggaagttc
atcgcctaccagttcaccgacacgcctctccagatcaagtcggtggtggcgccggaccac
gtcaagggctacatctacgtggagtcgtacaagcagacgcacgtgaagtcggccatcgaa
ggcatcggcaacctgaggatgggcttctggaaccagcagatggttcccatcaaggagatg
acggacgtgctgaaggtggtgaaggaggtgaccaacctgaagcccaagtcctgggtccgg
ctgaagagaggcctgtacaaggacgacatcgcccaggtggactacgtggagccgagccag
aacaccatctctctgaagatgatcccccgcatcgaccttgaccggatcaaggccaagatg
agcctgaaagactggttcgccaagaggaagaagttcaagagacccgggcagcggctgttc
gatgccgagaagatcaggtctctgggcggggaggtgagccacgacggagacttcatgatc
ttcgagggaaaccgctacagccgcaagggcttcctgttcaagagcttcgccatgtcggcc
gtgatcacagacggggtgaagcccacgctgtcggagctggagaagttcgaggaccagccg
gagggcatcgacctggaggtggtgacggagtcaggtaaggagcgggaacacaacctgcag
gccggagacaacgtggaggtttgtgagggagagctgatcaacctgcaggggaagatcctg
agtgtggacggaaacaagatcaccatcatgcccaaacacgaggacctgaaggaccccctg
gagttcccggcccacgagctgaggaagtatttccggatgggcgaccacgtgaaggtgatc
gccgggcggtacgagggcgacaccggcctcatcgtccgggtggaggagaacttcgtcatc
ctcttctccgacctcaccatgcacgagctgaaggtgctgccccgggacctgcagctctgc
tcggagacggcgtcgggcgtggacgcgggcgggcagcacgagtggggcgagctggtgcag
ctggacccccagacggtaggcgtgatcgtgcgtctggagcgcgagacgttccaggtgctg
aacatgcacggcaaagtgctgacggtgcgacaccaggccgtcaaccgccgcaaggacaac
cgcttcgccgtggcgctggactcagagcagaacaacatccacgtcaaggacatcgtcaag
gtcatcgacggcccacactcgggccgcgagggcgagatccgacacctgttccggggcttc
gccttcctgcactgcaagaagctggtggagaacggaggcatgttcgtctgcaagacccgg
cacctggtgctggccggaggatccaagccgagagacgtgaccaacttcacggtgggaggc
ttcgccccgatgagcccgcgcatcagcagccccatgcaccacgggggcggaggagcccag
cagagaggaggaggaggaggaggaggaggaggaggcggtgggggcggaatggggcggggc
cgagggcggagagacaacgagctgattggtcagacggttcggatctgccagggtccctac
aaaggctacatcggggtggtgaaagacgccaccgagtcgacggcccgtgtggagcttcac
tccacctgccagaccatctccgtggaccggcagagattaaccaccatgggggccaagagg
gacgcggggatgacgtccacccaccgccgcacgcccatgtacggctcccagacgcccatg
tacggaaccgggtcccggacacccatgtacgggtcgcagacgccgctgcacgacggaagt
cgtacgcctcactacggctcccagaccccgctgcatgatgggagcagaacgccgggtcaa
agtggagcctgggaccccagtaaccccaacacaccttcaaggaacgatgaggagtacgac
ttcggcttcgacgacgagccgtctccgtccccgcagggctacggcgggacgcccaacccc
cagacccccggttacccagaagtcccgtcaccgcaggtcaacccccagtacaacccgcag
acgcccggcacgccggccatgtacaacacggagcagtactcaccctacacggccccgtcg
ccccagggctcctaccagcccagccccagcccccagagctaccaccaggtggtgccgtcc
ccggtgggctaccagaacacacactcgcccgccagctaccaccccacgccctcccccatg
gcctaccaggccagtcccagccccagcccggtgggctacagccccatgacgcccggagcc
ccgtcccccgggggttacaaccctcacacgcccggctccaacatcgagcaaggcagcagc
gactgggtcaccaccgacatcctggtccgggtcaaggactccttcatggacctgatgggc
cagatgggcgtcatccgcagcgtcacgggcggcatgtgctccgtgttcatgcaggagtcg
gagaaggtggtgagcatcagcagcgaccacctggagcccgtcaccccgaccaagaacaac
aaggtgaaggtgattctgggcgaggaccgcgaggccaccgggatcctgctcagcatagac
ggagacgacggcatcgtccgcatggagctggacgaccagctgaagatcctcaacctgcgg
ttcctgggccggctggagcactga
DBGET
integrated database retrieval system
