KEGG   Cololabis saira (Pacific saury): 133442110
Entry
133442110         CDS       T09849                                 
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain
  KO
K06237  collagen type IV alpha
Organism
csai  Cololabis saira (Pacific saury)
Pathway
csai04510  Focal adhesion
csai04512  ECM-receptor interaction
csai04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:csai00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    133442110 (col4a4)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    133442110 (col4a4)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    133442110 (col4a4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:csai04147]
    133442110 (col4a4)
   00536 Glycosaminoglycan binding proteins [BR:csai00536]
    133442110 (col4a4)
Exosome [BR:csai04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   133442110 (col4a4)
Glycosaminoglycan binding proteins [BR:csai00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   133442110 (col4a4)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 133442110
NCBI-ProteinID: XP_061576026
LinkDB
Position
4:complement(50386875..50496888)
AA seq 1672 aa
MPPLSSSSSLSSLLFLYSWTTMLLLPTAVLAGDLTEPCGGRDCTTCRCFPAKGARGGPGF
LGEQGSQGPPGFPGSLGNPGMKGRRGDEGPPGPQGPKGDLGSVGVPGFPGFEGVPGHPGA
AGGPGLPGLDGCNGTRGDLGVPGLHGEQGFPGVQGFPGPKGYPGSPSYFYVPYPGEPGDA
GTSGVPGLPGEQGLRGTTGPVGPAGLDGVNGVPGLPGFRGSPGERGRSLPGQKGDEGDQG
VQGPPGPFEYVDPPEDLYIKGEQGLPGQKGGCGVPGRPGLDAFPGIEGEKGIVGFPGPRG
NSGEPGIPGEKGFQGMRGSPGLPGLIGQEGPKGVMGDPGPKGLPRSLDITHTGDPGEPGA
PGRRGPPGDIGFMGPRGPQGAPGRAMTGPAGGVGLEGLPGSKGDKGDPGQMITERLTPGE
PGKPGRPGLQGLKGEPGVPGTYCLPGLPGLSGDPGQLGPPGRPGLAGVKGQCGACSCGPP
LDIKGLPGPVGFRGTPGTPGDPGAPGLRGDKGVSGERGQRGEQGLLGFQGLRGFKGEKGS
FIVMDTQGQKGDPGQPGPTGRQGFPGRNGLFGAPGVPGNRGLQGAGYFGFPGDRGVPGLQ
GQKGLLGPAGPPGRGVMGALGQRGVPGIPGPIGFPGIPGPKGIKGDTPPCVSRNLGAGGA
KGNSGSPGYPGLPGPSGYRGITGLDGPKGDKGENGLPGQPGEQGPPGFAGDTGSEGLEGF
SFPGEPGPKGDPGPPGLPGPRGDSEVGSLGPAGLPGPLGFPGPKGVPGPPGRSGEPGVQG
RPGGCGSKGRRGRNGAPGVPGAPGPSPVRCGAGRSGGRGLPGPRGPIGPPGICGQKGDVG
IQGYASSGPPGTAGKPGTPGLPGYSGPAGVPGPTGDQGSLGSCGQKGLTGPQGRDGEPGP
SGLNGSPGSPGRTGERGQPGLDGYHGCEGARGQKGPIGDQGPPGDVICIPIKGPRGTQGL
PGISGFTGPRGSKGERGASGDPGSPGSSGAPGLKGTQGPPGLFGAPGAPGPPGLQGPKGY
VGFPGPKGELGGAGCLGQPGHPGYPGGPGPKGDRGDSTGCPGLPGDKGPSGLVGPLGSPG
PPGPTGERGYTGAPGQKGCKGHPGLRGDLGGSGVIGPPGPRGHPGDVGLPGEAGPDGPAG
LLGCQGLPGSPGPLGLDGLNGLKGVKGDMGTRGLSVTGNPGCTGRPGDKGPPGCPGPAGT
SQPGPPGPRGPQGPKGPPGACGPAGLPGSECKSPVPGSCGDPGCQGPKGERGCPGAMGDP
GQNPPVPGDCGDNGDPGCPGAKGLQGPQGPAGETGHPGYCGAKGERGDSGLLGVPGPKGL
RGHDGPRGCSGPKGFPGPAGLKGEKGRVSPCPPRPPAEAGDPGCPGPPGPPGGPGLPGQN
GQCGEKGAKGPPGPQGQIGCVGPQGPVGDRGYPGRDGERGAAGEYGAPGPTGERGCPAQN
QRVNLGFLLVNHSQSTQKPTCPPNMRILWTGYSLLYLEGQEKAYTQDLGQAGSCVRFFST
MPFSSCNLNACSYAGRNDKSYWLSTSAPLPRAPVEGPDIGRYISRCVVCEAPSPPLALHS
QTDTEPLCPPAWTSLWTGYSFLMHTGAGDEGGGQSLTSSGSCLSQFRAQPFVECQGPRGT
CHYFANIYSFWLTKISPAPSANGANGANGANTLTGDRQQRDNVARCNVCMKI
NT seq 5019 nt   +upstreamnt  +downstreamnt
atgccgcctctctcctcctcctcctccctctcctccctgctcttcttatacagctggacc
acgatgctcctgctgcctacagcggttctggcgggggacctgacggagccgtgcgggggg
cgggactgcaccacctgtcgctgtttcccggccaaaggagccaggggcggtccgggtttt
ctgggtgagcagggctcccaggggcccccgggtttcccgggctctctgggaaacccgggc
atgaagggccggagaggagacgaggggccaccaggaccccagggaccgaagggagatctg
ggttccgtcggggttcccgggtttccaggtttcgagggcgtcccgggacacccgggagcc
gccggagggcccggtctgccgggtctggacggctgtaacggcaccaggggagacttggga
gttcccggtctgcacggggaacaaggattccccggagttcaggggtttccagggccgaag
ggatacccgggcagcccgtcgtacttctacgtgccgtaccccggagaaccgggagacgcc
gggaccagcggagttcccggcctgccgggggagcagggtctccgggggacgacggggccc
gtcggccccgcgggactggacggagtcaacggagtccccggtttacctggcttcagaggt
tcacctggggaacgaggccgatctctgcccggacagaaaggagacgagggggaccaggga
gtccaggggcccccggggcccttcgagtacgtggaccccccagaagacctttacatcaaa
ggagaacagggtttgccggggcagaaagggggatgtggagtcccaggacggccgggcctg
gacgccttccccgggatcgagggagagaaggggattgtgggatttcctggacccagaggc
aattcaggtgaaccaggtatccctggagagaaaggtttccaggggatgagaggaagtcca
ggtctcccgggtctgattggacaggagggtccgaagggcgtgatgggagacccgggtccc
aagggcctcccgcggagcctggacatcacacacacaggtgaccccggggagcccggggcc
cccggacggaggggccctccgggagacatcggcttcatgggacctcgtggcccccaggga
gctcctggtagagccatgaccggaccagcaggtggcgtcggtctcgagggacttccagga
tccaaaggcgataaaggagatccaggtcagatgattacggagcgactgacacctggagaa
ccaggaaaaccgggacgtcctggactccaagggctgaaaggagagccgggtgtcccagga
acttactgtctcccgggactcccgggactgtctggagatccgggtcaactgggtcctccg
gggagaccgggcttggccggagttaaaggtcagtgtggagcctgttcctgcggacctccg
ttggacattaaaggcctccctggtcccgttggtttccgggggactccgggaaccccagga
gaccccggggccccgggcctgagaggagacaaaggtgtatccggagagcgaggacagaga
ggtgaacagggtctgctgggatttcagggcttgagaggctttaaaggtgaaaagggaagt
ttcatcgtcatggatactcaaggtcagaagggggacccgggccagccgggtccgacggga
agacaggggttccctggaagaaacggactctttggggccccgggtgtccccggaaaccgt
ggtctccagggtgccggttacttcggcttccccggagacagaggcgtgccgggactccag
ggacagaagggattgctgggacctgcaggacctccaggacggggtgtgatgggagcgctg
ggccagcgtggagtccctggaatcccaggacccatcgggttccctggtattccaggacca
aaggggatcaaaggtgacaccccaccctgtgtatccagaaacctcggcgctgggggcgca
aagggaaactctggcagtccaggatacccgggactcccgggaccttcgggttaccgcggg
atcacggggttggacgggcctaaaggagacaaaggagagaatggacttcctggacaaccc
ggggagcaaggtcctccagggtttgccggagatacagggagtgaaggacttgagggcttc
agttttcccggagaaccaggccctaaaggagatcctggccctcctggactcccagggcca
cgaggggattctgaggtggggtccctcggacctgctggcttaccaggacctttggggttt
ccaggacctaaaggagttcctggccctccaggcagaagtggagaaccaggagtccagggt
cggcctggaggttgtggttccaagggccgaagaggacgcaacggggccccgggtgttcct
ggggctcccggaccctcacctgtccggtgtggagcaggaaggtctggtgggcggggcctc
cccggccctcggggaccgatcggaccaccagggatttgtggtcagaaaggtgacgttggg
attcagggttacgccagctcggggcccccgggcaccgctggtaaaccgggcactccgggt
ctccctgggtactctggacctgcgggggtcccgggccccaccggagatcagggctcgctg
ggttcctgcggtcagaaaggtctgacggggccccagggccgcgatggagagcccggtccc
tcgggactgaacgggagtccagggtccccagggagaacgggggaacgaggccaaccgggg
ctagacggctaccacggatgtgaaggagcgcgggggcagaaagggcccatcggggaccag
gggccccccggagacgtcatctgtatccccatcaaaggcccgcgaggaacgcagggactc
ccggggatcagcgggttcaccggcccccgaggaagtaaaggagagcgaggagctagcgga
gatccggggtccccgggctccagcggagctccgggtctcaagggaactcaaggacctcca
ggactgtttggagctccgggagctccaggacctcctggacttcaaggacccaaaggatac
gtgggcttcccgggacccaagggagaactgggcggtgcaggatgtctcggccagccggga
caccccggttaccccggaggtccaggtcctaaaggggatagaggagattctactgggtgt
cctggtctccctggagacaagggcccctctggactcgtggggcccctaggttctcctgga
cccccaggaccgaccggagagagaggttatacaggcgctccgggacagaagggatgtaaa
ggacaccctggtctccgtggagacctcggtggatcaggtgtgatcggtccaccgggtccc
cggggacatccgggggacgtgggtcttcctggggaagcaggtccagacggaccagcggga
ctcctgggttgccagggactaccaggttctcctggtccgctgggactggatggactgaac
ggcctgaaaggagtgaaaggcgacatgggaactagaggtctgagtgtgaccggtaatccc
ggctgcaccggtcgtcccggagataaaggtcctcccggttgtccaggtcctgctggaaca
tcccagcccggcccgccgggcccccgaggcccccaggggcccaaaggacctccaggggcc
tgtggacctgcaggtctgcccgggtcggagtgtaagagtccagttcccggttcctgtggg
gatccgggctgccaaggccccaaaggagagagaggctgccccggtgccatgggggatccg
ggtcagaaccctccggttcccggggattgtggggacaacggagatccggggtgtcccgga
gcgaagggcctacagggaccccaggggcccgccggagagacgggccaccctggatactgc
ggagccaaaggtgagcggggcgacagcggcctgctgggcgtccccggccctaagggcctc
cggggccacgacggcccccgcgggtgctccggacccaagggctttcctggaccagcgggc
ctgaagggggagaagggccgggtgtctccctgcccgcctcgccccccggcggaggccgga
gacccggggtgtcccggaccccccggtccacccggagggcccggtctgcctggacagaac
ggacagtgcggggagaaaggtgccaagggcccgcccggccctcagggccagatcggctgc
gtggggccccaggggcccgtcggggaccgaggatatccaggccgggacggggaacgagga
gcggcaggagaatacggtgctccggggccgacgggcgagcgaggttgtcccgcccaaaac
cagagagtgaacctgggcttcctgctggtgaaccacagccagtccacgcagaaacccacc
tgtccgcccaacatgaggatcctgtggaccggatacagcctgctgtacctggagggccag
gagaaggcctacacccaggacctgggccaggccggctcctgcgtgcggttcttctccacg
atgccgttctcctcctgcaacctgaacgcctgctcgtacgccggccgcaacgacaagtcg
tactggctgtccacgtcggcgccgctgccgcgggccccggtggaggggcccgacatcggc
cgctacatcagccgctgcgtggtgtgcgaggcgccctccccccccctggccctgcacagc
cagacggacacggagccgctctgcccccccgcctggaccagcctgtggaccggctactcc
ttcctcatgcacacgggcgcgggcgacgagggcggcggccagtcgctgacgtcgtcgggc
agctgcctgagccagttccgggcccagcccttcgtggagtgccagggcccgcgcgggacc
tgccactacttcgctaacatttacagcttctggctgaccaagataagccccgccccctcc
gctaacggcgccaacggcgctaacggcgccaacacgctcaccggggaccgccagcagagg
gacaacgtcgcccggtgcaacgtctgcatgaagatctga

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