Cololabis saira (Pacific saury): 133442164
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Entry
133442164 CDS
T09849
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133442164 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133442164 (parn)
Enzymes [BR:
csai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
133442164 (parn)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133442164 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
133442164
NCBI-ProteinID:
XP_061576107
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All DBs
Position
1:28766520..28779726
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AA seq
677 aa
AA seq
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MEVTRQNFKDSLSAVYSAIDEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKH
SMDFLLFQFGICTFTYDQTKSKYVTKPFNFYIFPKPFSRTSPDIKFICQSSSIDFLASQG
FDFNKVFCHGIPYLNQDEEAQLREQTEERRNQHANGLGTPSFISPSSSKVPAHVPEEHKD
FINRVVEKIESLFSGNNKTLDLEPCTGFQRKLIYQTLNWKFPKGLHVETLETDKKERYIQ
VSKVDDEERKRREQQKLEKEQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQF
YCPLPEDLQDFKDVTMCVFPRILDTKLMASTQPFKELINNTSLAELEKQLKESPFKSPQC
ETTDGFPSYDTAQEQLHEAGYDAYITGLCFVSMANHLGSFLTPPKAYISARSKLIDPFFN
KLFLMRIIDIPYLNITGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQTDQVQIAMNTSRYAESYKIQTYAEYIKNKRQEKEKLGQTVKTWGEDGWVKPPY
PSSTTSAGFGYHRMRKRSISPAQGEQGTEEALIADGWSQYSYPDGTGNKKMKLDDISGQA
NVDAAESKTSEEWLKTNDGSHSAGLNPALDGTDPGTDADGTVTWRQAATGRKSQKNKKKK
SEATESTTSLFEVPEVW
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggaggtaacacgccaaaattttaaagacagtttaagcgcggtctacagtgcgatagac
gaggcagacttccttgccatcgatggagaattttcagggataagcgacggtcctaatgtc
agcgcactcactaacgggctggatacacctgaagagagatacaccaaactcaaaaagcat
tcaatggacttcctcttgttccagtttggaatatgtacattcacgtatgaccagacaaaa
tcaaagtatgtcacaaagccttttaacttttatatattcccaaaaccatttagtaggaca
tctcctgatataaagttcatctgtcaaagctccagtattgactttcttgccagccaggga
tttgacttcaacaaggtgttctgtcatggaatcccatatctgaatcaagatgaggaagct
cagctgagagagcagacagaagagaggagaaatcaacatgccaacggactaggaacacca
tcctttatatcaccttcttcctccaaagtccctgcacatgtacctgaggaacacaaagac
ttcatcaacagggttgtagagaaaattgagagcctcttcagtggcaacaacaagactttg
gacctggagccatgcactgggttccaaagaaaactgatataccagaccctgaactggaaa
tttcccaaaggtcttcatgttgaaaccttggaaactgacaagaaagagcgatatatccag
gtcagtaaagttgatgatgaagagaggaaaaggcgggaacaacagaaactggaaaaggag
caggaggagctaaatgacgctgtaggcttctccagggtgatccatgccatttctaagtct
ggcaaacttgttgtgggccacaatatgctcttggatgtgatgcacacaatccaccagttc
tactgccctctgccagaggatcttcaagattttaaagatgttacaatgtgtgtcttccca
agaattctagatacaaagttgatggcctccactcagccgtttaaggagctgataaataat
acctctctggcagagctggagaaacaactgaaagagagccctttcaaatcaccacaatgt
gaaacgacagacgggttccccagttatgacactgcccaggagcagctccatgaggcggga
tatgatgcttacatcactggcctgtgtttcgtatccatggccaatcatctgggttctttc
ttgacaccacccaaagcttacatctctgctcgctccaaactaattgaccctttttttaac
aagctcttcctgatgaggattatagatataccctacctcaatatcaccggaccagatttg
cagcctaaaagagaccatgtcctgtatgtcaccttccccaaagaatggaagacgagtgac
ctctaccagctctttagtgcctttgggaacatccaggtgtcatggatagacgacacatca
gcgtttgtgtccctaagccaaacggatcaggtacagatcgcaatgaacaccagccgttat
gccgagagctacaagatccaaacatatgcagaatatattaagaataaacggcaggagaag
gaaaaacttggccagacagtcaaaacctggggtgaggacggctgggtgaaacctccctac
ccttcctctacaacctctgctgggtttggatatcacaggatgaggaaacgcagcataagt
cctgctcagggagaacagggaactgaagaggctttaattgcagatggttggagtcagtac
tcgtatccagatggcacaggcaacaagaagatgaaacttgacgatataagtggacaggcg
aatgttgacgctgccgagagcaagacttcagaggaatggctgaagacaaatgatggatca
cattcagctgggttaaatcctgcactcgatggcacagatccaggcactgatgctgacggg
acagtcacctggcggcaagctgcaactgggaggaaaagtcaaaagaacaagaaaaagaag
tctgaagcaacagaatctacaacatcattgtttgaagtcccagaagtttggtag
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