Cololabis saira (Pacific saury): 133442237
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Entry
133442237 CDS
T09849
Name
(RefSeq) transient receptor potential cation channel subfamily V member 1-like isoform X1
KO
K05222
transient receptor potential cation channel subfamily V member 1
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
133442237
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
csai04040
]
133442237
Ion channels [BR:
csai04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
133442237
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ion_trans
Ank_3
Ank_5
PKD_channel
Tmpp129
DUF4271
Motif
Other DBs
NCBI-GeneID:
133442237
NCBI-ProteinID:
XP_061576178
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Position
4:10466008..10477247
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AA seq
761 aa
AA seq
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MNDKTMEKGQELNSVEPNKEQAKEEVSLDWLLRKDNSEIPVVPMDSNISLSSQCNVNVDN
IQPTTFTRERVFKAVSQGDPAQLEGLLDSLRIIKKQLTSPYFTDERNGKTALMKALLNLK
DGKNDTIETLLDIAEKTDDLENVINASYKDPYYKGQTALHIAIERRSFDHVKLLVQKGAD
VQAKASGTFFQNNGELGFYFGELPLSLAACTNQPDIVSFLIENPYRGADLTDKDSQGNTV
LHALVVIADNTTENTVMIASMYDEVLIQHNKIGKKRQVLLEAIENNQGLTPLKLAAKLGK
IGLFKHMLNREFMNEETRPLSRKFTEWVYGPVHCSLYDMSSIDTNEDNSVLEIIVCGSEI
PNRPEMLKIEPLNSLLQDKWTRFASKLFLMNFLAYLIYLAIFTTVAFYRKDGKPPFPVEN
SSLDHLRCAGELISVLGAVRFLYKTITIFRRNPPNFMSLVTDGFSEFLFFMQAALLLICV
VLYFSGRREYVGLLVLSLALAWVNVLYYMRGSKQLGMYNVMMQRMILGDLLHFLCVYSVL
LFGFSAAVVTLIDDSPPPHKKLTNGTLARGRSADVEPFKCRKPSYNDIGFTTLELFKFTI
GMGDLEFTDHVQYKAVFYILLISYIVLTYILLLNMLIALMGNTVEKISKQNESIWNLQRA
FTILDMERTLPRWLRNRLHSSVSDMVCFKNNLDKARRFVRVTEMNWKQWRSDLRVKLEED
PANEMMNLEPHVETPETPWNVNQLLGRIHHRRGRRHETSIL
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgaacgataaaacaatggaaaaaggacaggaattgaacagcgtggaaccaaacaaagag
caagcaaaggaggaggttagtctggactggctgcttagaaaagacaactcagagatacct
gttgttcccatggacagcaacatctcactatcaagccagtgtaatgtcaatgttgacaac
attcaacctactacattcacaagggagcgagtatttaaggccgtgtcccagggagaccca
gcccagctggaaggcctgcttgactccctcagaattattaagaaacaacttacgagccca
tatttcacagatgaaagaaatgggaaaacggctctaatgaaagctttgctgaacctgaaa
gatgggaaaaatgacactattgaaaccctcctggacatagcagagaaaacggatgattta
gaaaatgtgatcaatgcgtcttacaaggatccttactacaaaggtcagacagcattgcac
atcgccattgagaggaggagctttgaccatgtgaagctgctggtccagaaaggagcagat
gtccaagccaaagccagtggaactttctttcagaataatggagagcttggcttttatttt
ggggaactcccgctgtcactagccgcttgcacaaaccagccagatattgtgtcctttctc
attgaaaacccttacagaggagctgacttgacggacaaagactcacaaggaaacacggtg
ctgcatgccttggtggtcatagcagataacacaacagaaaacacagtgatgattgcaagc
atgtacgatgaggtcctcattcagcacaacaagattgggaaaaaaagacaagtccttttg
gaagctattgaaaataatcaaggtctgactcctctgaagttagctgcaaagctagggaag
attgggttgttcaagcatatgttgaatcgtgaattcatgaacgaagaaacaaggccgctt
tcaaggaaatttacggagtgggtctacggacctgttcactgctcactctatgacatgagc
tccatcgacaccaacgaggacaactctgtgttggagataatcgtctgtgggagcgaaatt
ccgaatcgccctgagatgctcaagatcgaacctctcaacagtcttcttcaggataaatgg
acgagatttgcttcgaaattattcctgatgaacttcttagcttatttgatatacctcgcc
atcttcaccactgtggccttctacagaaaggacggaaagccaccatttcccgtagaaaac
agctcactagaccatctccgttgtgccggtgagctgatcagtgtcctcggagctgtgagg
tttctttataaaacgataactattttccggaggaaccccccaaatttcatgtccctggtc
actgatggattcagtgaatttctgtttttcatgcaggcagccctccttttgatctgtgtg
gttttgtacttctctgggaggagggaatacgtcgggctcctcgtgctttcgctggctctc
gcctgggtgaacgttctttattacatgagaggatctaagcaactggggatgtacaacgtc
atgatgcagcgcatgatcctcggtgacctgttacactttttatgcgtctacagtgtcttg
ctttttggattttctgctgctgttgtcactctcatagatgactcacccccacctcacaaa
aaactgacgaatggcaccctggcgcgaggcaggagcgccgatgtcgagccgttcaagtgc
agaaagccaagttacaatgacatcggctttacaacgctggagctcttcaagttcactatt
gggatgggagatctggagttcactgaccatgttcaatacaaggctgttttctacattctg
ctcatcagctacatagttctcacttacatcctgctgctcaacatgctcatagctctgatg
ggaaacacagttgaaaagatctctaagcagaatgaaagcatctggaacctacagagggct
tttacaattctggacatggagaggactctaccgaggtggctgaggaacaggcttcactcc
agcgtctcggatatggtgtgtttcaaaaacaacctggataaggctcgtcgatttgtcagg
gtaactgaaatgaactggaaacaatggaggtcagatcttcgtgtgaaactggaagaagat
cctgcaaatgaaatgatgaatcttgagcctcatgttgagactcctgagactccgtggaac
gtcaatcagctcctggggaggattcatcacagacgaggtcgacggcacgaaaccagcatt
ctctag
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