Cololabis saira (Pacific saury): 133442341
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Entry
133442341 CDS
T09849
Symbol
smc1b
Name
(RefSeq) structural maintenance of chromosomes protein 1B
KO
K06636
structural maintenance of chromosome 1
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04110
Cell cycle
csai04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
133442341 (smc1b)
04114 Oocyte meiosis
133442341 (smc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
csai03036
]
133442341 (smc1b)
Chromosome and associated proteins [BR:
csai03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
133442341 (smc1b)
Meiosis-specific proteins
Cohesin complex and associated proteins
133442341 (smc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_21
AAA_29
Motif
Other DBs
NCBI-GeneID:
133442341
NCBI-ProteinID:
XP_061576288
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Position
4:complement(27560177..27609224)
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AA seq
1248 aa
AA seq
DB search
MGFLKQINVENFKSWRGKQIIGPFMRFNCIIGTNGSGKSNVMDALSFVIGERAAALRVRR
LRDLIHGAHIGQPVSGSASVALQFCDDRDTETVFSRTIAGDSSEYCIDGVTVTFSRYTEE
LEKIGIVTKAQNCLVFQGAVESIALKDPKERTKMLECISQSKACAAEYQAKKEALLKAKE
DTQFHFNKKKSATVEKKEVFKERIEAEKYQALVDDLHHNRLQLSLAELYCNETSIHAVGE
TLRQRQQAAAAKNNELVGREKTVKALKKEHGRLTREQQLTEKEIRGLEHALSQSQSQYIK
AKVNSSHHLKKNKEIRDAVKKSQKLLAIKEQELAEGRQEIAELKKTWKTYEKKIQEEGVA
RGRGIELDQDQFERYKELKELARKQGAVLRQQAEKLHWEVRADNEKMAFDERRKKEVEVA
IRNSQIHLEELTGRAEKLEEYTKTCKVSLEESRQQEESLTSELQWVNQRSAELNQELLQV
TEELRDARLDRHESKRQQQRRELLEKLRRLYPETVFGRLSDLCGPIHKKYLLAVTKVFGS
SMNSIVVTSEKVARECISFIKEERAEPETFLPVDYLVVSPLNERLREIPGATLVVDVIKI
NNSANAAQLKKVVQYVCGNALVCDSMKDARSVAFDRHERVRTVTLDGTLFKPSGVISGGS
NYLRTKARCWDEKDMMQLRDRKDQWTAELRDLMKRKRKETDLKLLTAQAQGVQTRLKYSK
ADLENLQKKVVPRCQADISRMESELANLDSQIQMQQESLEAKNERMEIIRHQIDQMEDLV
FADFCAEIGVDTIRQYEQEYLKQQAELDKKRLEFESQFARLNAQLEYEEDQLEKERRKLS
KREESIAEVEKTIEEQREEEMKLLEAVEDDQNKLLGLKNQLLSKKSLVAAAKTELGQKTQ
TLQGINKELVKLQREVMFAESALEQKRLARHNLLLACKIRGFPIGLLSGSLDDISEVQLD
AESESTSATADIYERESQLVIDYSQVEADLRDLTEGQTDSYLEKLKEAVASTEAALHHTC
PPNLKVLEKIRDVKDKLQGVNEAFDTSTRAARKCSQEFERIKSRRFHLFSQCFEHVSIVI
DQIYKRICRNSSAQAILSAENPDEPYLGGINYNCVAPGKRFMSMENLSGGEKAIAALALL
FSVNSFRPAPFFILDEVDAALDNTNIGKVTSFIREESRQNMQIIVISLKEEFFSKADALL
GVYSGFDEYMFSQILTLDLRPFPLEEEGDRQREGAAGGRDLFTPDSRA
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atggggtttttaaaacaaattaatgtcgaaaacttcaagtcctggcgtggaaaacagatt
attggtccgtttatgcggtttaactgcataattggcactaacggctctggtaagtccaac
gtgatggacgccctgagcttcgtgatcggggagcgggcggcggcgctgagggtccggcgc
ctgagggacctgatccacggggcccacatcgggcagcccgtgtccggctccgccagtgtg
gccctgcagttctgtgacgacagggacacagaaaccgtgttttcacggacaattgcagga
gactcctctgaatattgcatcgatggtgtcactgtcacgttttccagatacaccgaggag
ctggaaaagattggaattgtgaccaaagctcagaactgtctggtgtttcagggggcggtg
gagtccatcgctctgaaggacccgaaggagcgcaccaagatgctggagtgcatcagtcag
tccaaggcgtgcgctgctgaataccaggccaagaaggaggccctgctgaaggctaaagag
gacacgcagtttcacttcaacaagaaaaaatcagccactgtggagaagaaagaagtgttc
aaagaaagaatagaggcagagaaataccaggcgttggtggatgatcttcaccacaaccgt
ctgcagctgagtctggctgaactttactgcaacgagacgtccatccatgccgttggcgag
acgctgaggcagaggcagcaggctgcggcagctaagaacaacgagctggtcggcagggag
aagacggtcaaagccctgaagaaggaacacggccgcctcacgagagagcagcagctcacc
gagaaagagatccgtggtctggaacatgcgctgtcccagtctcagtcccagtacatcaaa
gccaaagtaaactcctcccatcacctgaagaagaacaaggagatccgggatgctgtgaag
aagagccagaagttgttggctattaaagagcaggagctggcagagggtcggcaggaaatc
gctgaactgaagaaaacctggaagacgtacgagaagaagatccaggaggagggagtcgcg
cggggaagagggatcgagctggaccaagaccagttcgagcgatacaaggagctgaaggag
ttggcccggaaacagggcgccgttctgcgccagcaagcagagaagttgcactgggaggtg
agagccgacaatgaaaagatggccttcgacgagcgccgcaagaaggaagtggaggttgcc
atcagaaacagtcaaattcacctggaagaattgacaggcagagcagagaaactggaggag
tacaccaagacctgcaaagtgtctctggaggaatcccgtcagcaggaggagagcttgacg
tcagagctccagtgggtcaatcagcgcagcgcggagctgaaccaggagctgcttcaggtg
acggaggagctgagagacgctcgtctggacagacacgagagcaagcggcagcagcagcgc
agagagctgctggagaagctgcgcagactctacccagaaactgtgttcggccggctgtct
gacctgtgcggccccatccataagaagtacctgctggccgtcaccaaggtgttcggcagc
agcatgaactcaatcgttgtgacttcggagaaagtagcccgggaatgcatctcgttcatc
aaagaggagagagccgaaccggagacgttcctccctgttgactatttggttgtgagtccg
ctgaacgagcgtctgagggagattcccggagccacgctggtggtcgatgtgatcaagatc
aataattcagcaaacgctgcccagctgaagaaggtggtgcagtacgtgtgcggcaacgcg
ctggtgtgtgacagcatgaaggacgccaggagtgtggccttcgaccggcacgagcgcgtc
aggacggtgaccctggacgggacgctgttcaaaccgtcaggggttatctctgggggctcc
aactatctgcggaccaaagctcgctgctgggacgagaaggacatgatgcagctgagggat
cgcaaggatcagtggacggctgagctgcgggatctgatgaagcggaagaggaaggagacg
gacctcaaactcctcactgctcaggctcagggtgttcagactcgcctcaaatactccaaa
gctgatctggaaaacctccaaaagaaagtcgtccccagatgtcaagcggacatatctcgc
atggagagcgaactggcaaacctggactctcagattcagatgcagcaggagagtctggag
gccaagaatgagaggatggagatcattagacaccagattgaccagatggaggacctggtt
tttgctgacttctgcgctgagatcggtgtggacaccatcagacagtacgagcaggaatac
ctgaaacagcaggcggagctcgacaagaaacggctggagtttgaaagtcagtttgctcgc
ctgaatgcacagctggaatacgaagaagaccaactggaaaaggagcgcaggaagctcagc
aaaagggaggagagcatcgcggaggtggagaaaaccatcgaggagcagagagaggaggag
atgaagctgctggaggctgtggaggacgaccagaataaacttctggggctgaagaaccag
ctgctctccaagaaaagcctggtggctgctgccaaaactgagctgggccagaaaactcag
actcttcaggggattaacaaagagctggtgaagctgcagcgggaggtgatgtttgcagag
tcggccttggagcagaaacgtttggctcgacacaacctgctgctggcctgcaagatccgg
ggcttccccatcggcctgctgtcggggagcctggatgacatcagtgaggtccagctggac
gcagagtcagaaagtacttcagccactgcggacatctacgagagagagtctcagctggtc
atcgactactcccaggtggaggccgatctcagggatctgaccgaagggcagacggattcc
tacctggagaagctgaaggaggccgtcgcctccacagaggcggcgcttcatcacacctgc
ccccccaacctgaaggtcctggagaagatcagggacgtgaaggacaagttacagggagtc
aatgaagcgtttgacaccagcactagagcagccaggaagtgcagtcaggagtttgagcga
atcaaatcccggcgcttccatctcttcagccagtgttttgagcacgtgtccattgtaatc
gatcagatttataaaagaatatgcaggaacagcagcgcccaggccattctgagcgccgag
aatccagacgagccgtacctggggggcatcaactacaactgcgtggcgccagggaagcgc
ttcatgtccatggaaaatctgtccggcggagaaaaggccatcgctgctctggctctgctg
ttctccgtaaacagcttccgacccgccccgttcttcatcctggatgaggtggatgcagct
ctggacaacaccaacatcggcaaggtgaccagcttcatcagggaggagtccaggcagaac
atgcagatcatcgtcatctcgctgaaggaggagttcttctccaaggccgacgccctcctg
ggcgtctactccggctttgatgaatacatgttcagccagatcctgaccctggacctgcgg
ccgttccccctggaggaggaaggagaccggcagagggagggagcagccggaggacgggat
ctcttcaccccggactcacgagcctga
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