Cololabis saira (Pacific saury): 133442404
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Entry
133442404 CDS
T09849
Symbol
lrfn1
Name
(RefSeq) leucine-rich repeat and fibronectin type III domain-containing protein 1
KO
K16354
leucine-rich repeat and fibronectin type-III domain-containing protein 1
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
csai04515
]
133442404 (lrfn1)
04990 Domain-containing proteins not elsewhere classified [BR:
csai04990
]
133442404 (lrfn1)
Cell adhesion molecules [BR:
csai04515
]
Immunoglobulin superfamily
SALM family
133442404 (lrfn1)
Domain-containing proteins not elsewhere classified [BR:
csai04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
133442404 (lrfn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
Ig_3
I-set
LRR_4
LRR_5
Ig_2
fn3
ig
LRR_9
Ig_DSCAM-DSCAML_C
LRR_14
C2-set_3
Sp38
Motif
Other DBs
NCBI-GeneID:
133442404
NCBI-ProteinID:
XP_061576374
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All DBs
Position
4:complement(34732708..34905994)
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AA seq
757 aa
AA seq
DB search
MERLVLCTLLCAALVKGYSCPGRCICQHLSPTLTLLCAKTGLLFVPPTIDRKTVELRLTD
NFITIIRRKDFFNMTSLVHLTLSRNTISQIVPHAFLGLRSLRALHMDGNRLTSIKSDHFK
GLINLRHLILGNNQIHLVAQTSFDEFVSTIEDLDLSSNNLRTLPWDAIARMTNINTLTLD
HNLIDHIGAGTFTLLTKLVRLDMTSNRLQKLPPDSLFQHAQVLSETKDSGSSTLAVSFGG
NPLHCNCELLWLRRLTREDDLETCASPEHLMDKYFWSIQEEEFICEPPLITKHSAAKSYV
MEGQGVTLKCKAVGDPDPDIHWRSPDGKLVHNNSRTILYDNGTLDILITTLRDSGAFNCV
ASNAAGIATAAVEINMIPLPLFVNNTGHMREDPGLSDITTSSKSGNDTKGYDKQDRRVMV
AELTSSSAVIRWPSERHIPGIRMYQIQYNSTADDTLVYRMIPSTSKNFLINDLAAGREYE
LCVLAVYDDGITSLTATRVVGCVQFHTAHEVSQCRFMHSQFLGGTMIIIIGGIIVASVLV
FIIILMIRYKAYSGPVESRSKVSAGMHSQTNGSQQRLQRSASKQLSDDGQCEAQAPRECM
ALVLRVDHEKKEDPASTTAILEVELSPNIDKMKRRASMDVQRSGPPSEDTQTDSSLTGST
MSLCLIGPNAGTKEAPRLKDKKSALANVGLLPNELARTRHRFSFDGGDYSIFQSHSYPRR
ARTRWHKSTNQLDVESSPLANRRVTFSSTEWMLESTV
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atggagcggctggttctgtgcacgctgctgtgtgcggctctggtgaagggctacagctgc
cccggccgctgcatctgccagcacctctccccgactctgacgctgctctgcgctaagacc
ggcttgttgttcgtgccgcccacgatcgaccgcaagactgtcgagctgcggctcaccgat
aacttcatcacaatcatccgcaggaaggactttttcaacatgaccagtttggtccacctc
accctgtcccgcaacaccatcagccagatcgtcccccacgctttcctcggcctgcgctcc
ctccgggcgctccacatggacgggaaccgcctcacttctataaaaagtgaccactttaaa
ggcctcatcaacctacggcacctcatcctgggaaacaaccagatccatctggtggctcag
acctccttcgatgagtttgtttccacaatcgaggacttggatctttccagtaacaacctg
cgcaccctcccgtgggacgctatagccagaatgaccaacattaacacgctcaccctcgac
cacaacctgatagaccacattggggcggggacctttacgttgctgacgaagctggtgcgc
ctggacatgacgtctaaccggctgcagaagctgccgccggacagcctgttccagcacgct
caggtgctgtcggagaccaaggactccggctcgtccactctggcggtcagcttcgggggg
aaccctcttcactgcaactgtgagctgctgtggctgcgcaggctgactagagaggatgat
ttggagacctgtgcctcaccagaacacctcatggacaaatacttctggtccatccaagag
gaggagttcatctgcgagccgccgctgatcaccaaacacagcgccgccaagtcttacgtg
atggaggggcagggcgtgactcttaaatgcaaagcggtgggtgatcccgacccagatatc
cactggcggtccccggacgggaagctggtccataacaactcccgcaccatcctgtacgat
aacggcacccttgatattctcatcaccacgctgagggacagcggcgcatttaactgcgtg
gcgtccaacgccgcgggcatcgccacagctgccgtggagatcaacatgatccccttgccc
ttgtttgtcaacaacacgggccacatgcgggaggaccccggcctctccgacatcaccacc
tcctccaaatccggcaatgacaccaaaggttacgacaagcaggacaggagggtgatggtg
gcggagctgacctcgtcctccgccgtgatccgctggccgtcggagcgccacatccccggc
atccgcatgtaccagatccagtacaacagcacagcggatgacactttagtgtacagaatg
atcccatctaccagcaagaacttcttaatcaatgacctggctgcaggacgggagtacgag
ctgtgcgtgctggcggtttacgatgacggcatcacgtcactgacggccactcgcgtggtc
ggctgcgtgcagttccacacggcccacgaggtcagccagtgtcgattcatgcacagccag
ttcctgggaggcaccatgataatcatcatcggcggcattatcgtcgcttcggtgctagtg
ttcatcatcatcctgatgatccgctacaaggcctacagcggccccgtggagagcaggtct
aaggtcagcgccggcatgcactcgcagaccaacggcagccagcagcggctccagcgctcc
gcctccaagcagctgtccgacgacggccagtgtgaagctcaggcgccccgagagtgcatg
gcgctggtgctcagggtggatcacgagaagaaggaggacccagcatccaccactgccatc
ctggaggtggagctttctccaaacatagacaagatgaagagaagagccagcatggacgta
cagcgctccggcccgccgtctgaagacacgcagacggacagcagcctgacgggctccacc
atgtcgctgtgtcttataggtcccaacgccggcaccaaggaggctccccggctgaaggac
aaaaaaagcgccctcgccaacgtggggctgcttccaaacgagctggcacgaactaggcac
cgattctcttttgatggtggggattactccatatttcagagtcatagttacccacgcaga
gcgaggacaaggtggcacaagtccaccaaccagctcgacgtggagtcttcaccgctcgcc
aacaggagagttactttcagcagcactgagtggatgctcgagagcacagtctga
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integrated database retrieval system
