KEGG   Cololabis saira (Pacific saury): 133443655
Entry
133443655         CDS       T09849                                 
Symbol
brcc3
Name
(RefSeq) lys-63-specific deubiquitinase
  KO
K11864  BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
csai  Cololabis saira (Pacific saury)
Pathway
csai03440  Homologous recombination
csai04621  NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:csai00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    133443655 (brcc3)
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    133443655 (brcc3)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:csai01002]
    133443655 (brcc3)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:csai04121]
    133443655 (brcc3)
   03036 Chromosome and associated proteins [BR:csai03036]
    133443655 (brcc3)
   03400 DNA repair and recombination proteins [BR:csai03400]
    133443655 (brcc3)
Peptidases and inhibitors [BR:csai01002]
 Metallo peptidases
  Family M67
   133443655 (brcc3)
Ubiquitin system [BR:csai04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   BRCC complex
    133443655 (brcc3)
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   JAMM
    133443655 (brcc3)
   BRISC complex
    133443655 (brcc3)
Chromosome and associated proteins [BR:csai03036]
 Eukaryotic type
  Centrosome formation proteins
   Microtubules and associated factors
    BRISC complex
     133443655 (brcc3)
DNA repair and recombination proteins [BR:csai03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-A complex
     133443655 (brcc3)
SSDB
Motif
Pfam: BRCC36_C JAB Prok-JAB UPF0172
Other DBs
NCBI-GeneID: 133443655
NCBI-ProteinID: XP_061576744
LinkDB
Position
5:complement(1285883..1295022)
AA seq 267 aa
MAAVSAVHLAADAFLVCLNHALSTEKEEVMGLLIGEQDAAARLLHVRSVIILRRSDKRKD
RVEISPEQLSAASSEAERLAAACGRPLRVLGWYHSHPHITVWPSHVDVRTQAMYQLLDRG
FVGLIFSCFIEDKSTRTGRVLFTCFQSAQAAKGQDFERVEVPVHVVPRDAIGRPCLESAV
ELPRILCQEEQDAYRRIHALPHLDPLARIHNGSVFTKNLCSQMAAVSGPLLQWLEERLLQ
NQRSAAALAREKEQLLRELRELDAATL
NT seq 804 nt   +upstreamnt  +downstreamnt
atggcggccgtcagcgccgtgcacctggccgcagacgcgttcctggtgtgcctgaaccac
gcgctgagcacggagaaggaggaggtgatggggctgctcatcggggagcaggacgcggcc
gcgcggctgctgcacgtccgctccgtcatcatcctgcgccgctccgacaagcgcaaggac
cgggtggagatcagcccggagcagctgtcggccgcgtccagcgaggcggagcggctggcg
gcggcctgcgggaggccgctccgggtgctcggctggtaccactcgcacccgcacatcacg
gtgtggccgagccacgtggacgtgcggacgcaggccatgtaccagctgctggaccgcggc
ttcgtgggcctgatcttctcctgcttcatcgaggacaagagcacgaggacgggccgcgtg
ctcttcacctgcttccagtcggcgcaggcggccaaaggccaggactttgagcgcgtggag
gtgccggtgcacgtggtgccgcgcgacgccatcggccggccgtgcctggagtcggccgtg
gagctgccgcgcatcctgtgccaggaggagcaggacgcgtaccggcgcatccacgcgctg
ccgcacctggacccgctggcgcgcatccacaacggctccgtgttcaccaagaacctgtgc
agccagatggcggcggtgagcggcccgctgctgcagtggctggaggagcggctgctgcag
aaccagcgcagcgccgccgcgctggcgcgcgagaaggagcagctgctgcgggagctgcgg
gagctggacgcagcaacgctgtaa

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