Cololabis saira (Pacific saury): 133443715
Help
Entry
133443715 CDS
T09849
Name
(RefSeq) transcription factor Sox-6-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csai03000
]
133443715
Transcription factors [BR:
csai03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
133443715
BRITE hierarchy
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
133443715
NCBI-ProteinID:
XP_061576872
LinkDB
All DBs
Position
5:complement(8741360..8877892)
Genome browser
AA seq
794 aa
AA seq
DB search
MMSSMRATPPFPAPEEEEADAPMGPDDPVGPEDAAWTGDEQEGPPTETPSPSPRQPPPSE
ETSETTGAEWESHRLAAADSEGSRGCAVFSYRTNSTSPAKPEEPARDRTEPVIGFAFGTP
ERRKGSLADVVDSLKQKKLVELTRTEQDDPPCVERLLSRDWKDRVDRLNATELLGDVKGT
PESLQQKERQLSTMISQLISLREQLLAAHDEQKKVAATQLEKQRQQMEVARQQQEQISRQ
QQQLLQQQHKINVLQQQIQVQGHMPPLMIPVFPHDQRSLAAAAAAQQGFLFPPGMSYKPG
ENYPMQFIPSTMAAAAASGLSPLQLQQLYAAQLAGMQLSPGAKMAAPPAPNAAAPLSPSG
LKAEKQVCSPGAQIKEEGSTQPLNLSARPKTADPHRPPASPTQMTQMLFSKSGPLGGAKG
RVPSPVTGLGRSASLDILSSLNSTALFGDQDAVLKAIQEARSLREQMQREQQLHQQGAHQ
HQGGQQSLEAKLAALSGMSLNNGNKERLHYETLSQHLGKLGEDAGKMVHRVIDLTRPEDL
DGNSMAEARVFRESRGRGSSSEPHIKRPMNAFMVWAKDERRKILQTFPDMHNSNISKILG
SRWKAMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQMMRS
RRQEMRQFFVGPQPPISLNRSPGGVAVYPGAITMATAATPSPHLTSDCSSNSASPEPTTP
VIQSTFAIKAEPGGALGGALGGGGASNGRGGASLDPPSDPTNGDDDMDMYEDFEDEPKSD
YSSDREAQEAIGAN
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcttccatgcgggcgacgcctccctttcccgccccggaggaggaggaggccgac
gccccgatgggtcccgacgacccggtgggtccggaggacgcggcctggaccggggacgag
caggagggaccccccacggagacgccgtccccgtctccacggcaaccgcctccctccgag
gaaaccagcgagacgacgggcgccgagtgggagagtcaccggctcgctgccgcggactct
gaaggcagccgaggctgcgccgtcttctcgtaccggaccaactctacctcccccgccaag
ccggaggaacccgcccgggaccgaacggagcccgtgatcgggttcgccttcgggacgccg
gagcgccgcaagggcagcctggcggacgtggtggactcgctgaagcagaagaagctggtg
gagctgacccggacggagcaggacgaccccccctgcgtggagcggctgctgtcccgggac
tggaaggaccgagtggaccggctgaacgccacggagctgctgggggacgtcaaaggaacc
ccggagtccctgcagcagaaggagcggcagctgtccaccatgatctcccagctcatcagc
ctgagggagcagctgctggcggctcacgacgagcagaagaaggtggcggccacgcagctg
gagaagcagcggcagcagatggaggtggcgcggcagcagcaggagcagatctcccggcag
cagcagcagcttctgcagcagcagcacaagatcaacgtcctgcagcagcagatccaggtc
cagggtcacatgccccccctgatgatccctgtgtttcctcacgaccagcggtcgctggcc
gccgccgccgccgcccagcaaggcttcctcttcccccccggcatgtcctacaagccaggt
gagaactaccccatgcagttcattccctcgacgatggcggctgcagcggcgtccggactc
agcccgctacaactgcagcagctctacgccgcgcagctagccgggatgcagctctccccg
ggagccaagatggcggctccgccggcccccaacgccgcggcgccgctgtcgccctccggc
ctgaaggccgagaagcaggtctgcagcccgggggcccagatcaaggaggaaggatccacg
cagcccctgaacctctcggcccgacccaagacggccgacccgcaccgcccgccggcctcc
ccgacccagatgacccagatgttgttctccaagagcggcccgctgggcggggccaagggc
cgcgtgcccagcccggtgacggggctgggccggagcgcctcgctggacatcctgtccagc
ctgaactccacggctctgttcggggaccaggacgcggttctgaaggccatccaggaggcc
cggagcctgcgggagcagatgcagcgggagcagcagctgcaccagcagggggcgcaccag
caccagggggggcagcagagcctggaggccaagctggccgccctcagcggcatgagcctc
aacaacggcaacaaggagcgtctgcactacgagactctgagccagcacctggggaagctc
ggggaggacgcggggaagatggtccaccgggtcatcgacctgacccggcccgaggacctg
gacggcaacagcatggcggaggcgcgggtgttccgggagtcccgcggccgcggcagcagc
agcgagccgcacatcaagagacccatgaacgccttcatggtctgggccaaagacgagcgg
aggaagatcctgcagaccttcccggacatgcacaactccaacatcagcaagatcctgggc
tcccgctggaaggccatgagcaaccaggagaagcagccgtactacgaggagcaggcccgg
ctcagcaagatccacctggagaagtaccccaactacaagtacaagccccgccccaaacgc
acctgcatcatcgacggcaagaagctgcgcatcggcgagtacaagcagatgatgaggtcg
cggcgccaggagatgaggcagttcttcgtggggcctcagccaccgatctccctgaaccgc
agcccggggggcgtggccgtctacccgggcgccatcaccatggcaacggcggccacgccg
tcgccccacctgacctcagactgctccagcaactcggcgagccccgagccgaccaccccg
gtcatccagagcacgttcgccatcaaggccgagcccggcggggccttgggcggggccttg
ggcgggggcggggccagcaacggcaggggcggtgccagcctggacccgcccagcgacccc
accaacggcgacgacgacatggacatgtacgaggacttcgaggacgagcccaagtcggac
tatagcagcgaccgcgaggcgcaggaggccatcggcgccaactga
DBGET
integrated database retrieval system
