Cololabis saira (Pacific saury): 133443853
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Entry
133443853 CDS
T09849
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133443853 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133443853 (edc4)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133443853 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
133443853 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_Prp19
CelTOS
WDR55
Pdc1_Ge1
Motif
Other DBs
NCBI-GeneID:
133443853
NCBI-ProteinID:
XP_061577120
LinkDB
All DBs
Position
5:complement(19570311..19622155)
Genome browser
AA seq
1395 aa
AA seq
DB search
MASNSDMDIEGATQHLRDILKLDRPGSDAQSSDGLRKTSFNGELNGLLGVGLLGTTDRSA
MSESTRPISTDLSTAEETQTICLSGDDGSSCKPITSNNVEIVASEDSSINSKARGSNKVK
IQPVAKYDWEHKYYYGRLIAVSNSFLAYAIRGTNNHAMIRVLSLELNERSLLKGFTGAVT
DLAFAHLDSSLLGCVDEAGNLMVWQLTYTSGKILDQIMVHIQRPEDTPLSSHRRLIWCPF
ILDDNEENQDDTSQTLALLHEDRAEVWDLEILRANNSSWPVNATDLKEGLITVKGHTQRV
SEGALSPDGTVLATASHDGYIKFWQIYIEGGQDKPRLYRCLHELRPHGGRPLSCLLFCDN
HKRQDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFCPDPFNSSVLPGLKASLDLS
AEYLILTDVQRKVLYVMELRQDLERGKASFTAVSEFLLTHPVLSFGVRDVSHSRLRHTEV
LPAEEESESITTEGTQGPTESKSGIQIKLYCVHTKSLQDVQIWFQPNGSSHLPEFLPRSD
SQDGLAGFLDHFTDQSSDKESGSGSQTDLRKIPSLPAPSDFLTNSGISSGAMPKLMTPDA
FMTPSTSVPVSPGSSASSLTIVTGISSNSDSTNRALDDISQSPSRADNNNGSSSLGLSGP
TSSPRAASAVLLPGLETLQPLPSPIGPLAMDNSQILDSPLLPPLASPTRARSPDVISSAS
TAISQDMPEIASQTLQLQRGLVPSLESLPLSTLQTDSMASAASALHLLTSQRTGNNSSLL
HLELGGADGPVGGAAETEPRLSNTPSLLETALSQENSGAAGGSSDANISHTAWPAAPDIT
RETRNSLRDNGLGDCSREETKDRRLSSPYHRRSYHLTQNDSHDAGAAQSDPDDEVASLAS
SSGNCDSRSSHRISVNDWKNSPRSSPKLKRKIKKDDGESSQSRQMDPGQFNTETQNELLM
LLRTQQRELSELWGLVETMPNAIMAQVEHVLVKQQEHEHRRLERVLAESQNHHQQLQEQL
GQQVSHTLSSALTNKMDKVLREELKKTVPQTISKSLEPMTGQLNSTIAAKLTNVEVNLKD
NVGKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPGFERSCQSMFQQINDSFKQ
GTQEYIQQLESHMKSRKQREQEARDPVVAQLQQMIDSFQTSTDQLANNITTTVRTEVQHQ
MQMMVGNLQESILSHVQRIVKGEVGMAMKEQQAVVTSSIMQAMRSAAGTPVHTAHLDYQT
QQANILQLLQQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQHPCPLSQPVLLSLIQ
QLSSNLSTRSELKISYLEDAVMNLDHSDPLTRDHMASVLTQVRPKLLTFLQQDPHSPLSK
RARRLVMMLQGLVNH
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaactccgacatggacatcgagggtgcgacgcagcacctgcgggacatcctg
aagctcgaccgcccgggcagcgatgcacagtcaagtgatggcctgagaaagacatctttc
aacggagaactaaatgggttgctgggagtaggcctgctgggaaccactgatcgctcagcc
atgtcagaatctaccagacccatctccacagatttgagcactgctgaggagactcagaca
atatgcctttctggtgacgatggatccagttgtaagcccatcacttccaacaatgtggag
atagtagcgagtgaagactcgagcatcaacagcaaagcacggggcagcaacaaggttaag
attcaacctgttgcaaagtacgactgggaacacaagtattactatgggagactgatagct
gtgtccaactccttcctggcctacgccatcagaggaaccaacaatcatgctatgattcgg
gtcctgagtttggaattgaatgagcgatccctacttaaaggattcaccggggctgtcaca
gatctggcttttgctcacctcgattcgtcgctgttgggttgtgttgatgaagcaggaaac
ctgatggtctggcagctcacatacaccagtggcaaaatactagatcagataatggttcat
attcaacggccagaagatactcccctcagctcccaccgtcgcctcatctggtgcccgttc
atcctggatgacaatgaggagaaccaggatgacacaagtcaaactctggcccttctacat
gaagacagggctgaagtgtgggaccttgaaatcttgagagccaacaacagcagttggcct
gttaatgctacagatctcaaagaaggtcttatcacagtgaagggccacacccagcgagtc
agtgaaggtgcactgtctcctgacggaacagtgttggcgacagccagccatgacggatac
ataaagttctggcagatatacatagaaggtggacaagacaagcccaggttgtacagatgt
cttcatgagttacgccctcacggaggacgtcccctgtcctgccttcttttctgtgacaac
cacaagagacaggacccagaagttcctttctggcggtttctgatcacaggagcagaccag
aatcaggagttgaagatgtggtgcaccgtttcctggacctgtttacaaaccatcaggttc
tgtccagatccattcaactcatcagttctgccaggtctcaaggccagtttggacctctct
gctgaatatctcatcctgactgatgtgcagagaaaggttctgtatgtgatggagctgcgg
caggacctagaaaggggaaaggccagtttcacagccgtgtcagaattcctgctcacccac
ccagtgctcagcttcggagtccgggatgtcagccacagccgactgcgacacaccgaggtc
ctccccgcagaggaagagagcgagagcataacaacagaaggaactcaaggccccacagag
tccaagtctgggatccagattaaactctactgtgtccataccaagagtttgcaggatgtc
cagatctggtttcagcccaacgggagttcccacttgccagagtttcttccccgttctgat
tctcaagatgggcttgcagggtttttggaccatttcactgatcagagctctgacaaggaa
tcggggagtggctcgcagaccgacttgaggaagatcccatcacttcctgcaccttcggac
ttcctgaccaactcgggcatcagtagcggcgcgatgcccaagctgatgactcccgatgct
ttcatgacaccaagcacttcggtaccagtgtctcctggaagcagtgccagcagtctgact
atcgtgacgggtatcagcagcaactcggactcaaccaacagagctttggacgacatcagt
cagagtcccagcagagcggacaacaacaacggcagcagcagtctggggctctctggcccc
accagcagtccgagagctgcttctgctgtgctcctgcctggactcgagactctacagcct
ttgccatctcctattggtcccctggctatggacaactctcagattctggattccccgctg
ctgccgcctctggcctccccgaccagggcccgctcccctgatgtcatctcctcagcctcc
acagccatttctcaggacatgcccgagatcgcatctcagaccttgcagcttcaacgtgga
cttgtgcccagtttagagtccttacccctttcaacactgcagacggacagtatggcctct
gccgcctctgctctgcacctgctaacctcgcaacgcacaggcaacaacagcagcttgttg
caccttgagctcggaggtgcagatgggccagtgggcggggcagcagagacggagccccga
ctcagcaacacaccttctcttcttgagactgcattatcccaggaaaactctggagctgca
ggaggttcctcagatgccaacatcagccatacagcgtggccagctgccccagacatcacc
agggaaacgaggaacagtctcagagacaacggcctgggagactgttcaagagaggagaca
aaggaccgacgcttgagctcaccttatcatcgccgctcctatcacctcacacagaacgac
agtcatgatgcgggtgcagctcaaagtgaccctgacgatgaggtggccagtctggcgtcg
tcctctggaaactgcgactctcgatcttctcacagaatatcagttaacgactggaagaac
tcaccgcgaagctcgccgaaactaaagaggaagatcaagaaagatgacggtgaatcatcc
cagtccagacaaatggatcccggtcagtttaataccgaaacgcagaacgagctgctgatg
ctgctgcggacccagcagagagagttgtctgagctgtggggactcgtggagaccatgccc
aatgccatcatggctcaggttgagcacgtcctggttaaacaacaggaacatgagcaccgc
agactagagagagtcctggcagagagtcagaaccatcaccagcagcttcaggaacaactg
ggccagcaggtcagccacaccctcagctcggcgctgaccaacaagatggacaaggtgcta
cgagaggagctaaagaaaacagtcccacaaacaatttctaagagtctggagccgatgacg
ggtcagctgaacagcaccattgctgctaaactgaccaacgtagaggtcaacctgaaggac
aatgttggcaaggtggtcaagtcaaagaacacaacagacgctatcggtcgagcggcagct
gaagccatgcaggggcccattcaagccgcctacaaagacgccttccagagcatcgtcctg
cctggctttgaaaggagctgccagtccatgtttcaacagatcaatgacagcttcaaacaa
ggcacacaagaatacatccagcaactggagtctcacatgaagagcaggaagcagagagag
caggaggcgagggaccctgtggttgcacagctgcagcagatgatcgacagcttccagacc
tccaccgatcaactggcaaacaacataacgacgacagtcaggactgaggtccagcaccag
atgcagatgatggtgggaaatctgcaggagtctattcttagccatgtgcagcggattgtc
aaaggagaggtgggcatggcgatgaaggagcagcaggcagtggtcacctccagcatcatg
caggcaatgaggtcagcagccgggacacctgtccacacggcacacctggactaccagacg
cagcaggccaacatcctgcagctcctccagcagggccagctcaaccaggccttccagcag
gctctgtcggcgacggatctcaacctggtcctgtatgtgtgcgagaccatcgactcccag
caggtgttcggccagcacccctgccctctcagccagcccgtgctgctgtcgctcatccag
cagctttcctccaacctcagcacccgctccgaactcaagatcagctacctggaggatgcg
gtgatgaatctggaccacagcgaccccctgacccgagaccatatggcgtcggtgttgacc
caggtccgaccgaagctgctgaccttcctgcagcaggacccgcacagcccgctcagcaag
agggcgcggcgcctggtcatgatgctgcagggactcgtcaaccactag
DBGET
integrated database retrieval system
