Cololabis saira (Pacific saury): 133444134
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Entry
133444134 CDS
T09849
Symbol
gtf2h1
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03022
Basal transcription factors
csai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133444134 (gtf2h1)
09124 Replication and repair
03420 Nucleotide excision repair
133444134 (gtf2h1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csai03021
]
133444134 (gtf2h1)
03400 DNA repair and recombination proteins [BR:
csai03400
]
133444134 (gtf2h1)
Transcription machinery [BR:
csai03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
133444134 (gtf2h1)
DNA repair and recombination proteins [BR:
csai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
133444134 (gtf2h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
PH_SLA1
GeBP-like_C
Motif
Other DBs
NCBI-GeneID:
133444134
NCBI-ProteinID:
XP_061577663
LinkDB
All DBs
Position
5:33703383..33717217
Genome browser
AA seq
550 aa
AA seq
DB search
MASLSEEVLLVVKKVRQKKQDGTLYLMAERIAWGPEGKDRFTVSHPYSDIRCQKISPDGK
AKIQLQLVLHTGESTTFHFSNESTALKDREAVKELLQQLLPKFKKKANKELEEKNRMLQE
DPVLFQLYKDLVVSQVISAEEFWANRLGGINNTEPAAYNDKQEVGISGAFLADIRPQTDG
CNGLRYNLTADIIESIFRTYPAVKQKYSENVPHNLTEKEFWTRFFQSHYFHRDRINTGTQ
DIFSECAKQDEKGLKSLVIQGVKNPLVDLLSLEDKTLDEGYGVGSALPSTSNANKTVKDS
SNSAIIKRFNHHSAMVLAAGSRKGDMPTDQASETSSTDGNSRDSDFFQPPVKKVKLQEAI
EYDDLQGENRPKTVALNLKKSDRYAHGPMPLQSQQYTSSQDIINAVNYIRHEVVNYKPNL
TQVMPSAAASSAIAALSPGGILMQAGSQQAINQMVPTDVQEELKHLYVAAGELLRHFWSC
FPVNTPFLEEKVTKMKSNLERFQMTKLCPFKEKIQRQYLSTNLTGHLEDMLQTAYSKFHI
WQTRRMLRKT
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggcatccctgtcagaagaggtgctgcttgtggtgaagaaggtccgtcagaagaagcag
gatgggactctctacctgatggctgagaggatcgcctggggtccagagggcaaggaccgc
ttcacagtcagccacccgtattcagatatccgctgtcagaagatcagtcctgatggaaaa
gccaaaattcagcttcaactagtccttcacacgggcgagagcaccacattccacttttca
aatgaaagcactgcactgaaagaccgagaagctgtcaaggagctgctgcagcagcttctg
cccaaattcaagaagaaggctaacaaggagctggaggaaaaaaacaggatgcttcaagaa
gatccagtgctcttccagctgtacaaagatcttgtggtgagccaagtgatcagtgctgag
gaattctgggccaacaggttaggaggtataaacaatacagaacctgcagcgtacaacgac
aaacaggaagttggtatatctggtgcatttttggccgacatcagacctcagacggatggc
tgtaatggcttgagatacaatctgacagctgacattattgagtccatcttcagaacgtac
cctgcagtgaaacagaagtatagtgaaaatgtgcctcataacctgacggagaaggagttc
tggacccgctttttccagtcccattattttcacagagaccgcatcaacacaggaacgcag
gatatcttttctgaatgtgccaagcaagatgaaaaaggtttgaagtctctggtgattcaa
ggagtgaagaatcctttagttgacctgctgtcactggaggataaaacattagatgagggc
tatggagttggttcagcattaccttcaacctccaacgctaacaagacggtgaaggacagc
agtaactcggccattattaagcggttcaaccatcacagcgccatggtgttggcagcaggc
tcgcgcaagggggatatgccaactgaccaagccagtgaaacaagcagcacagatggaaac
tcaagggattcggacttctttcaacctcctgttaagaaggttaaattacaagaagccata
gaatatgatgatctacaaggagaaaacagaccgaaaacagtcgctttaaacctgaagaag
tccgacaggtatgctcatggtcccatgccgcttcagtcccagcagtacacatccagtcag
gatatcatcaacgcggtcaactacatccggcatgaggtggtcaattacaaacccaatctc
actcaggtgatgcccagcgcagcagcgagttctgccattgcagcgctctctccagggggc
atcctcatgcaggcgggttcacagcaagccataaatcagatggttcccactgatgttcaa
gaagagttaaaacatctttatgtcgctgctggagagttgttgagacacttctggtcctgt
tttcctgtaaatacaccttttttggaggagaaggtgacgaaaatgaaatcaaaccttgaa
agatttcagatgacgaagctttgtccttttaaggagaagattcagcgtcagtacttgagt
acaaatctcacagggcacttggaggacatgttgcagaccgcctacagcaagttccacatc
tggcaaacccgccggatgctaaggaaaacctga
DBGET
integrated database retrieval system
