Cololabis saira (Pacific saury): 133444158
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Entry
133444158 CDS
T09849
Symbol
hps5
Name
(RefSeq) Hermansky-Pudlak syndrome 5 protein
KO
K20191
Hermansky-Pudlak syndrome 5 protein
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csai04131
]
133444158 (hps5)
Membrane trafficking [BR:
csai04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
133444158 (hps5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_HPS5
TPR_HPS5
PEP5_VPS11_N
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
Beta-prop_THOC3
Beta-prop_RIG_1st
Beta-prop_IFT140_2nd
Beta-prop_Vps41
Beta-prop_WDR3_1st
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
133444158
NCBI-ProteinID:
XP_061577696
LinkDB
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Position
5:33718479..33737919
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AA seq
1116 aa
AA seq
DB search
MPQVQAVPETHGHVLAEFDCLDPLLSALRLDSGRLKCTSLAVSRKWLALGTSAGGLHLIQ
REGWKQRLILTHKEGSITQVTCCPHDEDFIAVATSQGLVVVWDLQLERRGRPERVSVSWE
HRGQNITALCWDTSMLRVFAGDSGGKVSFLRAGSSKLGKGSAFVIFPVQTVTTVDSRVVQ
LGYQEGRLLVSSLSRCYLCDTERERFWRVGNKERDGEYGACFFPQNRGLLVGQPPLLYCA
RPGSRLWEASFNGEVLSTHQFKQLLTCPPLPLVTYRKVPSYSPVQRNPQSLAFTKLLYFG
DQNLLAWTDSAIYVFTPQNGQVLLWTEVKDLADIAVHRSELFCLHGNGRLSHLSLLPAER
CVERLLRRESWSVAAAVCCMFQHTITTSRARKSISIDRLEHLKSQLGSSTHLELSAHLDE
VITKLEPLDSACSSRRSSISSHESFNVLDCGIYRVISRRGSQSDEETSSLINHSMSEEER
LKEFGFVQEEEQLDHDPQSSEPTEADRSEQGLQFHLPLSFRPKPPRIALQAVKDSVSSFV
KKTTEKINTLQMNSELWQRPEFKEGGQAETSVSSAPYSEEVETEVFDEISSMEADMQELR
SATDRAFSEMQDPLVLLDPACLAGALLEWLPVLERVLGASDLRSGAASDSNLDGSGEERL
ERDYLNTCSEQQGDPTETAAEEGKGGEDSPDFGDGSETQETSDFSEHVPSCGTPPEPVRV
LPPKPLPSDLLPRLTELATLYTELSCFRNQDGAPACTSFLRRYFFLLDQERVRRMCLLCY
QEQPEVKSSFMEAMLEHTLSSKVVEVIQRGDLLKSLRSLREQQPWSAPPLLAHLHRLYEK
HGEAAVRSYSQFYPTITPADVMTMAQRSHFLAYLDNLVLSRTEEHRLSFLQSLLEPESLR
QDWLELALTHDAPQRCDTMTPEGQPRWHSHCFTWGYGRLLSLLIHLPADLSSKQKMAETC
RSHGFWTGYLYLCSELQRRTEAFSTICQLDDISLLEEPDGVEPRTWDEWKLLIRLSQQYS
GVAAPQPAADVNGSGWSNGSTEREGRINPESLTLMLARTAGPDRALAVLEECGVQLVLSD
HSKLVCELLRVAEKRQRAMIQTMLERCDRFLWSQHA
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaggtacaagctgtaccagagacccacggtcacgtcctggcagagttcgactgc
ctcgacccactcctgtctgctctacgcttggactcgggccggctcaagtgcacctctttg
gcagtatcaaggaagtggctcgcgttggggacatcggctgggggtttgcacctgatccag
agggagggctggaaacagaggctcatcctcacccacaaggaggggtctatcactcaggtg
acatgttgccctcacgatgaagactttattgcagtcgcgacaagtcagggtctggtggtg
gtgtgggacctgcagctggagcggcgtggccgtccggagagggtcagcgtgtcgtgggag
cacaggggtcagaacatcacagcactctgctgggataccagcatgctcagagtgttcgcc
ggggactctggaggcaaagtgtcctttctcagggccggatcctctaaactgggcaagggg
tcagcatttgtcatttttcctgtccagaccgtcaccactgttgactctagagtggttcag
cttgggtaccaagaaggacgccttcttgtgtcttccctgagtcgctgttacctctgcgac
accgagagggagaggttttggcgtgttggaaataaggagcgtgatggggagtatggagcc
tgttttttcccccagaacagggggttattagtgggtcagccccctctgctgtactgcgcc
cggccaggctctcgtctatgggaggccagttttaatggtgaagtcctgagcacccatcag
ttcaagcagctgctgacatgccctcctctacctcttgtcacctacaggaaagttccgagt
tacagtccagtgcagaggaatccacagtccctggccttcactaaactgctttattttgga
gaccagaacctgctggcctggacagattcagccatttatgtcttcactcctcagaatgga
caagtgctcctgtggacagaagttaaagatttggcagatatcgcagtccatcgcagtgag
ctcttctgtctccatggcaacgggcgtctgtcccacctgtcgttattgcctgcagagcgc
tgtgttgagcgtctgctgcgtagagagtcctggagcgtagcggccgccgtctgctgtatg
ttccagcatacgatcacgaccagcagggccaggaagtccatatccatcgaccgccttgaa
cacctgaagtctcaactgggttccagcacacacctggagctgagtgctcacctggacgag
gtcatcacgaagctggagcctctggactccgcctgcagcagccggaggagcagcatttcc
tctcacgagagcttcaacgtcctggactgtgggatctatcgtgtgatcagccgcagagga
agccagtcggatgaggagacgagttcgctcatcaatcactccatgtcggaggaggagcgg
cttaaagagttcggttttgtccaggaggaggagcagctggatcatgatccacagagcagc
gagcccacggaggccgatcgctctgagcaaggcctgcagttccacctgcctctctcgttc
cgccccaaacccccccgcatcgcgctgcaggcggtcaaagacagcgtgtccagttttgtg
aagaagacaacagaaaagatcaacaccctccagatgaactctgagctctggcagcggccc
gagttcaaagagggaggacaggctgagacgtcggtcagcagcgctccgtactcggaggaa
gtggagactgaagtttttgatgaaatatctagcatggaggctgacatgcaagaacttcgt
tcagcgacagatcgagctttttcggagatgcaggacccgttggtgctcctagatccagcc
tgcctagcgggagctctgctggagtggctgccagtgttggagcgagttctcggagcttca
gatctcaggtcgggtgctgcaagcgattcaaacctggacgggtcaggagaggagagattg
gagagggattatctaaacacctgctcagagcaacaaggagacccaacagaaactgctgca
gaagaggggaaaggaggagaggattcccccgactttggtgacgggtctgagacccaggag
acgtcggacttctctgagcatgtcccttcatgtgggacccctcccgagccggtccgagtg
ctgcctcctaaacctctaccctcagatctgctgcctcgtctcactgagctggccactctc
tacactgagctgagctgcttcaggaaccaggatggagcaccggcgtgcactagtttcctg
cgccgctatttcttcctgctggatcaagagcgcgtgagacggatgtgtctgctgtgttac
caggaacagccggaggttaagagctccttcatggaagccatgctggagcacactctgtcc
agtaaagtggtggaggttattcaaagaggcgatctgctgaaatctctgcggagtctgaga
gagcagcagccttggagcgcacccccgctcctcgcccacctgcacaggctgtatgagaag
cacggagaggccgctgtacgctcatactcccagttctaccccacaataactcctgctgat
gtcatgacgatggcccaacgaagccacttcctggcatacctggataatctagtgctatca
agaaccgaggagcacaggctgtcgtttttacagtcgcttcttgagccagaatcgctgaga
caggactggctggagctggcccttacccatgatgctcctcaacgctgtgacacgatgacc
cccgaaggacagcccaggtggcattctcactgtttcacttggggttacggacgtcttctg
tccctgctgatccaccttcctgcggatctttcgtccaagcagaagatggccgagacttgc
cgcagtcatgggttctggacggggtacctttacctttgcagtgagctgcagcgtcgcacg
gaagctttctccaccatctgccagctggatgacatcagcttgctggaggagcctgatggt
gttgaaccgcggacctgggacgagtggaagctcctgatccgactgtctcagcagtacagc
ggcgtggcggcgcctcagccggccgcagacgtgaacgggagcggttggtccaacggctcg
acagaacgtgaaggaagaatcaacccggagagtctcacgctcatgctggctcggacggcc
gggcccgatcgagccctggcggtgctggaggaatgcggggtgcagctggttctttcggac
cactccaaactggtgtgcgagctcctgagagtcgccgagaagaggcagagggcgatgatc
caaacgatgctggagcgctgcgatcgcttcctttggtctcagcacgcttga
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