Cololabis saira (Pacific saury): 133444180
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Entry
133444180 CDS
T09849
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csai03009
]
133444180 (ighmbp2)
03012 Translation factors [BR:
csai03012
]
133444180 (ighmbp2)
Enzymes [BR:
csai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
133444180 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
133444180 (ighmbp2)
Ribosome biogenesis [BR:
csai03009
]
Eukaryotic type
Other ribosome biogenesis factors
133444180 (ighmbp2)
Translation factors [BR:
csai03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
133444180 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
Viral_helicase1
zf-AN1
DEAD
ResIII
Helicase_RecD
IstB_IS21
nSTAND3
AAA_16
AAA_22
UvrD-helicase
SLFN-g3_helicase
Flavi_DEAD
SRP54
ABC_tran
PhoH
DnaB_C
AAA
HEM4
NPHP3_N
AAA_25
Zot
ATPase
AAA_31
SpoIIAA-like
Motif
Other DBs
NCBI-GeneID:
133444180
NCBI-ProteinID:
XP_061577733
LinkDB
All DBs
Position
5:34087864..34096000
Genome browser
AA seq
981 aa
AA seq
DB search
MEAFVSKTLELLQEEREAEIEETRIWQENVSLKDLQNKGVCLLKLQIGSQSTGLYGRTVV
VLEPRKHLGFSSLPSNSFGPGDIVGLYDTAGCTAPSQICTGTVTRVSQASISVAFDDVKD
GINLDTDSLYNLLKLANDITYKRMKHALNALNGYNNGPAANMINVLFGDSQPSSHSQTNA
FEFFNSDLDDSQREAVSFALSQRELAVIHGPPGTGKTTTVVEIILQAVKQGQKVLCCAPS
NVAVDNLVERLARCKAKVLRLGHPARLLESIQKHSLDAILAQSDSAGIIADIRKDIDKAF
MGRRKMQEKGDRFNFKREVGELRKELKDRETTAITQILKRADVVLSTNTGACDTGPLKFL
PAEHFDWVVVDECAQALESSCWIALLNARKCILAGDYKQLPPTIKSQTAASKGLSLSLME
RLIQMYGDSVVRMLTVQYRMNSAIMDWASKEMYQGRLTAHRSVESHLLKDLAGVTCVDET
RTPLLLIDTAGCGMNEMETTDEVSKGNLGEVDIVELHIKALTEAGVKAKDIAVIAPYNLQ
VDLLRQKLSSRHPDLEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVTRA
RRHIAVVCDAQTVQNHAFLKSLISHMTEFGEVRTAFEYLSDVAPQNYSRTHKDANVSSAK
QKARDQPSGRGKQGQKKSTGDSGKENPAGPEKHAKTSTPALTEHKQNKDRYAEIREQVEK
FIEDSNQSDLQFPSSFNSHDRLLVHQVAEELGLVHESKGEGGGRCITVSRPQTPAPAREL
KPDGGKETVAALQSEPAPQCPGPKPPLDLKTLHLERMKREQQKREESTQKKKEQSRLPPA
QGQSAKKAKGKNKVKAGSCDIAAASAPDDDFDALISAVVKADSVCSFTKCKASMLTLGQL
CLFCNRQFCFSHHIPEVHGCGDKAKSHARMRISKEGVLYAGSGKKDKSMDPNKKAYLQRR
LDSKLKDMATRRKPKNNEKEG
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgtttgtgtccaagactctggagcttctacaggaggagcgggaggccgaaatc
gaagaaaccaggatatggcaggagaatgtgtctctgaaggatcttcaaaataaaggcgtt
tgcctgctgaaactgcagattggaagtcagtccacaggcctgtatggtcgcacggttgtt
gtcctcgagccaaggaagcatcttggtttctcctctcttccgagcaacagttttgggccg
ggtgatatagttggcctgtatgacactgctggatgcactgcgccgtcgcagatatgcaca
gggacagtgacgcgggtcagccaagcatctataagtgtggccttcgatgatgttaaggat
ggcatcaatttggatacagattctctttacaacctgttaaaattagccaatgacatcacc
tacaaacgaatgaagcatgcactgaacgcattgaatgggtacaacaacgggccagctgct
aatatgataaacgttcttttcggagactcacaaccatcgtcccactcacagacgaatgct
tttgagttttttaactcggacctggacgattcccaaagagaagccgtttcctttgctctg
tcccagagagaactggctgtgatccacggacctccgggcacgggaaagaccaccactgtg
gtggagatcatcctgcaagcagtcaaacaagggcaaaaggtcctctgctgtgctccttca
aatgttgctgtggacaatttagtggaaaggttggctcggtgcaaggccaaggtcctgaga
ctgggtcacccggccagactgctggagtccatccagaaacactcgctggacgctatcctc
gctcagagcgacagcgcaggcatcatcgctgacatccggaaagacattgacaaagcattt
atggggaggaggaagatgcaggagaaaggagaccggttcaacttcaaacgagaagtagga
gaattgagaaaggagctgaaagacagggagaccacggcgattacccagatcctgaaaagg
gccgatgtggtcttatctaccaacactggtgcttgtgacaccggccctctgaagttcctg
cctgcagagcactttgactgggttgtggtggacgagtgtgcccaggccctggagagcagc
tgctggatcgctctgctaaacgcacgcaagtgcattctggccggagactacaagcagcta
cccccaactatcaaatcacaaacagctgcatcaaaaggcctgtccctgagtctcatggag
agactcattcagatgtacggagactccgtggtccgcatgttaacggttcaataccgcatg
aacagcgccatcatggattgggcctccaaggagatgtaccagggaagactaactgctcac
cgctcagtggagagtcacttactaaaagatctggcaggtgttacctgtgttgacgagacc
agaactccactcctgctgatcgacaccgcggggtgtggcatgaatgaaatggagaccacg
gacgaggtgtccaaaggcaacctaggtgaagtagacatcgtggagctgcacataaaggcc
ttgactgaagctggggttaaagccaaagacattgccgttatcgctccatataatcttcaa
gtggatcttctacgtcagaaactttcttcacgacacccggatctggagataaaatcggtg
gatggatttcagggcagagaaaaagaagcggttgtgctgtcgcttgttcggtccaacaga
aaaggggaggtcggatttctcgcagaggacagacggataaacgtcgcggttactcgtgcg
agacgccacatcgctgtcgtgtgtgacgcgcagaccgttcagaatcatgctttcttgaag
tccctcatcagtcacatgactgagttcggtgaggtcagaacagcattcgaatacctcagc
gacgtcgcaccgcagaactacagtcgcacccacaaagacgccaacgtctcgtccgccaaa
cagaaggccagagatcagccgtctggtcgggggaagcaaggacagaagaagtccaccggg
gacagcggtaaagaaaatcctgccggtccagaaaagcacgcaaagacgtccacgccagcg
ctcacagagcacaagcagaacaaggacaggtacgccgagatcagagagcaggtggagaag
ttcatagaggactcaaatcagagtgacttacagtttccatcatcgtttaactcgcacgac
cggctgctggttcaccaagtcgcagaggagctgggcctcgtccatgaaagcaaaggagag
ggcggcggcaggtgcatcaccgtctccaggccacagacgccagctccggccagggagctg
aaaccggatggaggaaaggaaacggtcgccgctctgcaaagcgagccagcgcctcagtgt
ccagggccgaagcctccattagacctgaagactttacatttggagagaatgaagagggag
cagcagaaaagggaggaaagcactcagaaaaagaaggagcagagtcgccttcctccggct
cagggccagtcggcaaagaaagccaaagggaagaacaaagtgaaggcgggttcctgcgac
atcgccgccgcctcggctcctgatgacgactttgacgctctcatcagtgctgtcgtgaag
gctgacagcgtctgtagttttaccaagtgtaaagcgtccatgttgacgctcggacagctt
tgcttgttctgcaacaggcagttctgtttcagtcatcacatcccagaggtccacggctgc
ggggataaagccaagagtcacgcccggatgagaataagcaaagagggggttctttatgct
ggaagtgggaaaaaagacaaatccatggaccccaataagaaagcatatctgcaaagaaga
ctggactctaaattaaaagatatggcaacgcgaaggaaacccaagaacaatgagaaggag
ggttag
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