Cololabis saira (Pacific saury): 133444228
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Entry
133444228 CDS
T09849
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csai03000
]
133444228 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
csai03310
]
133444228 (roraa)
Transcription factors [BR:
csai03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
133444228 (roraa)
Nuclear receptors [BR:
csai03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
133444228 (roraa)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
133444228
NCBI-ProteinID:
XP_061577812
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Position
5:complement(35422641..35632317)
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AA seq
519 aa
AA seq
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MESPPDPASDPGNSASEPATPVRETPVNLETLRKAEHPAPVRRQTCSSTNRGISVTKKTH
TSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNR
CQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQRDHQQQPGEAEPLTP
SYGLSANGLTELHDDLSGYMDGHTPDGTKPDSAVSSFYLDIQPSPDQSGLDINGIKPEPI
CDFAPGSGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQAFL
QEEVESYQSKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVV
FVRMCRAFDSQNNTVYFDGKYAGPDVFKSLGCDDLISSIFEFGKNLCSMHLSEDEIALFS
AFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCSRH
TEKLTAFKAIYPDIVRAHFPPLYKELFGSDFEQSMPVDG
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagtcccctccagatccagcgagcgacccgggcaacagcgcctcggagccggctacc
ccggtcagggaaaccccggtaaacctggagacgctccggaaagcggagcatccagcgccg
gttcggaggcagacctgctccagcaccaacagaggtatctcagtaacaaagaagacacat
acttctcaaatcgaaataattccctgcaagatctgtggagacaaatcatcaggcatccat
tacggcgttataacatgtgagggctgtaagggcttcttcaggaggagtcagcagagcaat
gccgcgtactcctgcccccgtcagaaaaactgcttgatcgatcgcaccagccgcaaccgc
tgccagcactgcaggctgcagaagtgtctggcagtgggaatgtcacgagatgcggtgaag
tttggtcggatgtcgaagaagcagcgagacagcctgtacgctgaggtgcagaagcaccgg
ctgcagcagcagcagcgggaccaccagcagcagcccggggaggcggagccgctcacgccc
agctacggcctctcggccaacggcctcacggagctccacgacgacctcagcggctacatg
gacggccacacccccgacggcaccaaaccggactcggcggtcagcagcttctacctggac
atccagccgtctcccgaccagtcgggcctggacatcaacggcatcaagccggagcccatc
tgcgacttcgcccccggctccggcttcttcccttactgctcgttcaccaacggagagacc
tctccgaccgtgtctatggctgaactagagcacctggcccagaacatctccaagtcgcac
atggagacgtgtcagtacttgagagaggagctgcagcagatgacctggcaggccttcctg
caagaggaggtggagagctaccagagcaagccccgggaagtcatgtggcagctgtgcgct
atcaaaataacggaggccattcagtatgtggtggagttcgccaagcgcatcgacggcttc
atggagctgtgtcagaacgatcagatagtgctgctgaaagcaggctctctggaagtcgtg
tttgtcagaatgtgccgtgcctttgactcgcaaaacaacacagtctattttgatggaaaa
tatgctggacccgacgtgttcaagtcattaggctgtgacgacttgatcagctccatcttc
gagtttgggaaaaacttgtgttctatgcacctgtctgaggatgagatcgccctgttctct
gccttcgtgttgatgtctgctgaccggtcctggctgcaggagaaggtgaaggtggagaaa
ctccagcagaaaatccaactggctctgcagcacgtcttgcagaagaaccacagagaggac
ggtatactcacaaagttgatatgcaaagtgtcgacactgcgagcgctgtgcagtaggcat
acagagaagctcacagctttcaaagcaatatacccagacattgtgcgtgcccacttcccc
cccttatacaaggagctgtttggatcagactttgagcagtccatgcccgttgacgggtag
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