Cololabis saira (Pacific saury): 133444373
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Entry
133444373 CDS
T09849
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai02010
ABC transporters
csai04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
133444373
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
133444373
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
csai02000
]
133444373
Transporters [BR:
csai02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
133444373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_23
DUF7353
Motif
Other DBs
NCBI-GeneID:
133444373
NCBI-ProteinID:
XP_061578105
LinkDB
All DBs
Position
1:complement(36194302..36233024)
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AA seq
2271 aa
AA seq
DB search
MAVSTQLGLLLWKNFTFRRRQTVQLLIEIIWPLFIFFILISVRVHYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRSPTPGESPGIVGNFNDSIISRLFIDAKKILLYTQNDK
SYEGYKGLLRALRKLQKNTAGFKLKDFLRDNETLSQFLHHNASLPHHALKHILEADVNLE
KVLTKGFGFHLRDLCNTTPLEEFVHIADHNVSSLTQDIICNSSTDWLNKAQTHFLSNLDF
LKPIRRDVRSDPKVVQEVSAATDSLLESLGALAVEFASMKSWKDLRKEIVYLNENPSGSP
NQMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHGNDSDSESISAYDNSSTPYC
NNMMRNLESSPISRMIWRALKPLLMGKILYTPDTPATQRIINEVNRTFQELGVLRDLGGM
WVEMKPKLWNFMENSEEMDMVRTLLQNNASAAFLNAQLSGTEWRTSDVGDFLSKASEDQR
PAKSAYTWRNVFNETDQAIQTISRFMECVNLDKLEPVANEERLVNKSMSLLDNQKFWAGI
VFPDITQADSSDLPPNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYVWGGFSY
LQDVIEQGIIRAVTGTKERTGIYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAII
IKGVVYEKEARLRETMRIMGLNNGTLWLSWFISSLIPLLMSAGLLVMLLKMGNLLPYSDP
GVVFLFLGSFGIVTIMQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFGA
KVVVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLASPLEEDSYNLTTSICLMLFDAVLY
GIMTWYIESVFPGQYGIPRPWYFPFTRTYWCGEKENKNLSDALSKKGNPEAECIEEEPGH
IDPGVYIENLVKVYSHGNKLAVDGLSLKFYEGQITSFLGHNGAGKTTTMSILTGLFPPTS
GTAYILGKDIRNELSTIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLPEEQVKAEMEQ
IVNDVGLPHKRKSRTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLL
LKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTHLGTGYYLTLVKRDY
DLTLQSCRNSASTVSYSKKTEKEDNVSESSSDAGLGSEPESETTTIDVSLISNVIFKHVS
EARLVEDLGHELTYILPYQSAKDGAFVELFHELDDRLTDLGISSYGISDTTLEEIFLKVA
EDSGVDAVELSDGVVPTRTRRRHAFGDHQSCLKPFTEDDLDFNDSEGDPESRETDWLSGT
DGKGSYQVKGWSLKRQQFVALLWKRFLYARRSRKGFFAQIVLPAVFVCIALVFSLIVPPF
GKYPSLALHPSMYGEQFTFISNDSPEDAHSNRLLGALTEDPGFGTRCMKGEPIPDMPCTA
VEDEWSVPEVPQSVTDMFDKGNWTMENPSPLCECSCDGLKRMLPECPPGAGGLPPPQMKI
SDKDTLQNLTGRNVSDYLVKTYAQIIGKSLKNKIWVNEFRYGGFSLGARSNQFLSHKDEI
DEAIAQLRRRFHLERGTASDRFFHSLSSFIQGLDTKNNVKIWFNNKGWHSIGSFLNVMNN
GILRSSLPAGKDPRKFGITAHNHPLNLTKEQLSQVALMTTSVDVLVSICVIFAMSFVPAS
FVVFLIQERVNKAKHMQFISGVQPFLYWLANFVWDMCNYIVPATLVIIIFVCFQQDAYVS
STNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGSVSTFVLELF
GSNEIGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRSPLAWDMVGK
NLFAMAVEGVVFFCITVLIQYRFCFKARSSTSHLKPIGEEDEDVARERQRILSGGGQSDI
LELRQLTKIYKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLTGDSLVTSGEAY
LASKSVNTEIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEVCEVAEWGIRK
LGLVKYVDKSAGSYSGGNMRKLSTAIALIGGPPVVFLDEPTTGMDPKARRALWNAILSII
KEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVAGPDPD
LRPVMEFIEEELPGSTLKEKHRNMLQYQLPSSLTSLARIFSLLSTNKDALSIEDYSVSQT
TLDQVFVNFAKDQSDEDHLKDVHLNKRDAVVVDLSKLNSFLVDNKTRESCV
NT seq
6816 nt
NT seq
+upstream
nt +downstream
nt
atggcagtctccacacagctgggtctgctgctatggaagaacttcaccttccgccggaga
cagactgtccagctgctgatcgagatcatctggcccctgttcatcttttttattctgata
tcagttcgggtacattatccaccctacgagcaacatgaatgccacttccctaacaaagcc
atgccctccgccggtactctgccctgggtacaaggcatcatctgcaatgccaacaacccc
tgcttccgtagtcctacacctggagagagccctggcattgttgggaattttaatgactcc
ataatttctcgcctgtttattgatgccaagaagatcctgctctacactcagaatgataag
agctacgaaggatacaagggacttctgagggccctcaggaagcttcagaagaacactgct
ggcttcaagctgaaggactttttgcgagacaatgagaccctttctcaatttcttcaccac
aacgcatctcttcctcaccacgcactcaagcacatattggaggctgatgtcaatttggaa
aaggtgctcactaaggggtttggattccatctgcgagacctttgcaatacgacacctctg
gaggagtttgtccacatcgccgaccacaatgtgtccagtttgactcaagatataatctgc
aattcatcaaccgactggctcaacaaagcccagacccacttcctctccaacctggacttt
ctcaagcccattcggagggacgtgagatcagatcctaaagttgtccaggaagtctctgct
gcaaccgacagtctcctggagagcttgggagcgttggccgtggagtttgccagtatgaag
agttggaaggatctgcgaaaagagatcgtgtatctaaatgagaatccatcagggtctcca
aaccagatgtaccaggcggtgtcacgtatcgtctgcggacacccagaggggggtggcctc
aaaatcaaatctctcaattggtatgaagacaacaactacaaggccctgttcggaaatcac
ggcaatgacagcgacagtgaatccatctccgcttatgacaactcgtccaccccttattgt
aacaacatgatgaggaacctggagtccagccccatttccaggatgatctggcgagcgctg
aaacctcttctcatggggaagatcttgtatacaccagataccccagcaacccaaaggatc
atcaatgaggttaataggaccttccaggagctgggcgtactgagggatcttgggggaatg
tgggtggagatgaagcccaaactttggaacttcatggagaacagcgaggaaatggacatg
gtcaggaccctgctccagaataatgccagtgctgccttcctcaatgcccagctcagtggg
actgagtggcggacttcagatgtgggagacttcctgtcaaaggcctcagaggaccagaga
cctgcaaagtcggcctacacctggaggaatgtcttcaatgaaaccgaccaggccatacaa
accatttcacgcttcatggagtgtgtaaacctagataagctggagcctgtcgccaacgaa
gaacgcttggtcaacaagtccatgagtcttttggataaccagaagttctgggctggaatc
gtgttccccgacatcactcaggccgacagctcagacctgccccccaatgtcaactacaag
atccgcatggacatcgataacgtggagaggaccaacaaaattaaagatggatactgggac
cctggtcccagggcagacccctttgaggaccttcggtatgtctggggcggattttcgtac
ctgcaggacgtcatcgagcaaggcatcatccgagccgtcacaggcaccaaagaaagaaca
ggcatctacattcagcagatgccttacccttgctatgttgatgatattttcttgcgagtg
atgagccggtcaatgcctctctttatgactttggcatggatgtactcggtggccatcata
atcaagggggtggtttacgagaaagaagcgcgtctgagagagaccatgagaatcatggga
ctgaacaatggcaccctgtggctgagctggttcatcagcagtttgatcccgctgctgatg
agtgcaggcttgttggtgatgctactgaagatgggcaacctgctgccttacagtgacccc
ggtgttgtgttccttttcctgggatccttcggcatagtgaccatcatgcagtgctttctc
atcagcaccctattctcccgtgccaacctggcagcggcctgtggtgggatcatatacttc
accctgtacctgccctacgttctgtgcgttgcctggcaagactacgtgggatttggagca
aaagttgttgtgagtctgctgtctcctgtggcctttggttttggatgtgagtactttgcc
ctgtttgaggagcaaggggtgggaatccagtggtccaacttgcttgccagccctctggag
gaggatagctacaatctgaccacctccatctgcctcatgctgtttgatgcagtgctgtat
ggaatcatgacctggtacatcgagtctgttttccctggccagtacgggatacccaggcct
tggtatttccctttcacaaggacgtattggtgtggagagaaagaaaataaaaacctctcc
gacgctctgtcaaagaaggggaatcctgaggctgagtgcattgaggaggagcccggccac
atcgacccaggggtttacatcgaaaatctggtgaaggtttacagtcatggaaacaagctg
gccgtggatggactgtccctgaaattctatgaaggacaaatcacctccttccttggtcac
aatggagctggcaaaaccacaactatgtcaatcctgaccggattgttccctcccacctct
ggcactgcttacatcctcggcaaggacatccgcaatgaactcagtaccatccgacagaat
ctgggagtctgtccccagcacaatgtgcttttcagcatgttgacggtggaagagcacatc
tggttctacgctcgtctgaaagggctcccagaggaacaggtgaaagctgaaatggaacag
attgtgaatgatgtcggcctgccccacaaacggaagtcccgcacgagcaccctctccggg
ggcatgcagaggaagctgtcagtggccctggcttttgttggaggctcaaaggttgtgatt
ctggatgaaccgacagcaggtgtagatccttatgcacgcagaggaatctgggacttgctg
ctgaaatacagacaaggccgcaccatcatcctgtccactcaccacatggatgaagctgac
atcctgggtgatcgtattgctatcatttcccacgggaagctctgctgtgtgggctcctcg
cttttcttgaagacgcacctgggcacaggttactacctgaccctggtcaagagagactac
gatctgacactacagtcctgcaggaattctgctagcacggtctcctacagcaagaaaaca
gagaaggaggacaatgtatcagagagcagttcagacgctggcttgggcagcgagccagaa
agtgaaaccaccactattgacgtctccctcatctccaatgtgattttcaagcacgtctcc
gaggctcgcttggtggaggatctcggccatgaactcacttatatcttgccctatcagtca
gctaaagatggagcctttgtcgagctcttccatgagctggatgaccgactcactgacctg
ggaatatcaagttatggaatatccgataccaccctggaagagattttcctgaaagtggct
gaggacagtggagtggacgctgttgagctttcagatggagttgtacccacaaggacacgt
cggcgtcatgcatttggagaccaccagagctgcctgaagcccttcactgaggacgacctg
gacttcaacgactctgaaggtgacccagaatctcgcgagactgattggctcagtggaaca
gacggcaaaggttcgtaccaggtcaaaggctggagcctgaagagacagcaatttgttgca
ctgctgtggaaacggttcctctacgctcgccgctccagaaaaggcttttttgctcagatt
gttcttccagcagtgtttgtttgcattgccctcgtgttcagcctgattgttcctccattt
ggaaagtatcccagtttggctctgcatcccagcatgtatggagaacagtttaccttcatc
agtaatgactcacctgaagacgctcacagcaacagactattgggagctctgacagaagac
ccaggatttggaacacgctgcatgaaaggcgagcccatcccggacatgccgtgcacagca
gtggaggatgagtggtcggtgcctgaagtgcctcagagtgtgacggacatgttcgacaaa
ggcaactggaccatggagaatccctctcccctgtgtgagtgcagctgcgacgggctcaag
agaatgctgcccgagtgcccccccggagccggtggacttccaccaccacagatgaaaatc
agtgacaaagacactctgcagaacttaactggcagaaatgtgtcggactatctggtgaaa
acctacgctcagattattggcaagagcctgaagaacaagatttgggtcaacgagttcagg
tacggtggattctcattgggtgccaggagtaatcagttcctgtcccacaaagatgaaatt
gatgaggcgattgctcagctgaggagacgcttccatcttgaaagaggaactgcatccgat
cgcttttttcacagcctctccagttttatccaaggattggacaccaagaataacgtcaag
atctggtttaacaacaagggctggcacagcattggatccttccttaacgtgatgaacaat
ggcatcctccgttccagtctgccagctggaaaagaccccagaaagtttggcatcactgcc
cacaatcacccactgaacctcaccaaggagcagctatcccaagttgctttgatgacaaca
tcagtggacgtgctggtgtccatctgcgtcatcttcgccatgtccttcgtccctgccagt
tttgtggtctttctcatccaagagagagtgaacaaagccaaacacatgcagttcatcagt
ggagtccaacccttcctctattggctggcaaactttgtttgggatatgtgcaattacatt
gttccagccacactggtgatcattatatttgtgtgtttccaacaagacgcttatgtctca
tccaccaatctgccagttctggccctgcttctgttgctttatggatggtcaatcaccccc
ctgatgtacccagcctccttcttctttaagatccccagcactgcctacgtggtcctaacc
agcgtcaacatactgataggaatcaacggcagcgtgtccacgtttgtcctggaactgttt
ggaagcaatgagattggcggtattaatgacatcttgaagaacgtgttcctcatcttccct
cacttctgccttggtagaggtctaattgacatggtcaaaaatcaggccatggctgatgca
ttggagagattcggtgaaaaccgtttccgctctcctctggcttgggacatggttggaaag
aacctgtttgcaatggccgtagagggcgtcgtcttcttctgcatcaccgtcctcattcag
taccgcttctgcttcaaggccaggtcatccaccagccacctgaagcctatcggggaagag
gatgaggatgtggccagagagcggcagaggattctgagcggagggggtcagtcagacatc
ctggagctcagacagctcaccaagatttacaagcggaaacagaagcccgcagtggaccgg
ctctgcgttggcatcccccctggagagtgttttggtctgctcggagtgaatggagcaggg
aagacgagcaccttcaaaatgctgacaggagactctttggtcaccagtggtgaggcctac
ttggctagcaagagcgtgaatactgagatagatgaagtgcaccagaacatgggttactgt
ccccagtttgatgctattaatgacctattgaccggcagagagcacctggaattctatgct
atcctgagaggagtacctgaaaaggaagtctgtgaggtggcagagtggggcatccggaaa
ctgggtctggtcaaatatgtggacaaatcagctggcagctacagcggagggaacatgagg
aagctttctactgccattgctctcataggaggaccccctgttgtgtttctggatgaacca
acgacaggcatggaccctaaggcgcgtcgagccctgtggaacgccatcttgagcatcatc
aaagagggacgatctgtagtccttacgtctcacagcatggaggagtgcgaagcgctgtgc
accaggatggccatcatggtcaacggcaggttccgctgtctgggcagcgtgcagcaccta
aaaaacaggtttggtgacggctacaccatcatcctgcgggtggcggggccggacccagac
cttcggcccgtcatggagttcattgaagaggagcttccggggagtacgcttaaggaaaag
caccggaacatgctgcagtaccaacttccctcatccctcacctccctggcccgcatcttc
tccctgctctcaacgaacaaggacgcactcagcatagaggactattccgtctctcaaacc
actttagaccaagtgtttgtaaattttgccaaggaccaaagtgatgaggaccatttgaaa
gatgtgcatctgaacaagcgggatgctgttgtagtggacctttccaaactaaactctttc
cttgtggacaacaagaccagggagagctgcgtgtga
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integrated database retrieval system
