Cololabis saira (Pacific saury): 133444414
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Entry
133444414 CDS
T09849
Symbol
helz
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133444414 (helz)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
133444414 (helz)
3'-5' decay
Other 3'-5' decay factors
133444414 (helz)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
zf-CCCH
AAA_19
UvrD-helicase
ResIII
PAM2
zf_CCCH_4
AAA_22
AAA_16
zf-CCCH_4
TPR_1
AAA_5
Motif
Other DBs
NCBI-GeneID:
133444414
NCBI-ProteinID:
XP_061578177
LinkDB
All DBs
Position
1:37510963..37582702
Genome browser
AA seq
2066 aa
AA seq
DB search
MADRRAEKSCEEASRSLARREYEAAVNHSTEALVVLAPQTSPSSALVRQSPPSLVAATPL
RSRALLYRIAAFLQLKNYDEADEDCKHVLAEDITWGDGSLQASLRSMLLDGSLQEVASIL
SKALYGEPMNGIVTKDLTRLKMLFSEIEAINRDMAPEYTDDQEEEVHDGWQFRPPPRGVT
SSEEYTLCKRYLEQGLCRYGAQCTSAHSQEELMEWQKRYASRLIRLKQQQESKHFTENYM
ETLIEKWMNSLSPEKVLSDSLEGVHVETSSSLSVTVATKKSSHSWIYSLLCKPARKLNRV
ALLYDAHRPHFFITSVSAGEHLQVVPKESQEWTPNEETTVAADNGLDHCVYKVVVGFSTE
IFGTFRQTIVFDFGSEPVLMQRIMVDAASIEDLEHLMAARQQLLMTAKRWDSSCKTIVGF
IPNETIGELERSLLSRYQIPLSADQLFTQSVLDKTLTKDNYQARLHDLLYIEEIAQYKEV
SKFNIKVNLQLVTSFMLTGISVGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNSVL
LLPLGREGFSSHQPPPGVKERVYEAVIEEKTKDYIFLRICKDCCEELGLLPDRELQVELQ
FQLNRLPLCEMQYALDRIKDNNILFPDISLVPTIPWSPNRQWDEQLDPRLNAKQKEAILA
ITTPLSIPLPPILIIGPYGTGKTFTLAQAVKHILRQDNSRVLICTHSNSAADLYIKDYLH
PYVEAGNVHARPLRVYFRNRWVKTVHPVVQQYCLISSTQVTFQMPTRENILRHRVVVVTL
STSQYLCQLDLEPGFFSHILLDEAAQAMECETIMPFALASKTTRIVLAGDHMQLSPFVYS
EFARERNLHVSLLDRLYEHYPSEFPCRILLCENYRSHEAIINYTSELFYDGKLMASGKQP
SHKDFYPLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEELRKKWPVAWGKLDEGSIGV
VSPYADQVFRIRAELRKKRMPEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRK
EQLVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWEHFITICH
ENTSLHGITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRPLQGHQSSSQALHPLHHPH
PQHVQSASNKQALQQQQQQQQQQSPPKGKHANHTEHLPPEGYAQPNPAVLIGNPIRAFTP
PLGATPAGMGKSPSPVQRIDPHTGASILYVPAVYGGNMVMSMPLPLPWPGYQNRFAVDPR
IMSHPAAMAYNLNLLQTQNRGSPVPYGGVTHPSPLGMGQPSPDKDLQADPVRNGKVEGCP
KSEQNRLQTPEKKITDIKEKQADLDTGQSRSLDSQTEGIIGFPNTLLHRKDPSAAQRPLN
YHLAPPSTAFPPHPASGRPFTQQYPIPRLPYRVNQPQHPGMTQQNQQQQQLSPAYTGGSH
NASFFTGPVTTHRSVHSPSVDGAESGGVEEMSSSVRTPMGHPGGHHPGLSQHNRISSFGE
DGQDGGLGDSLDLQGSLPLEALTQQQQQQQQAARLGQWGEAPGPFLQGGVAFPLPQQLAH
LAQPGMARFSHQLLRTASWGLGANMEEEAFPSASTGPAFTRYPGLLREIPPQEQPESREA
SEMQPPPQSRLLQYRQSQSRASGDPSSSLAAVSSHAAAFPSGPYSHDTGRNLLNDNLLNN
QALQQQHPRNPLYNTGSYPHQPPAHSGSPPPSQVKYLLQEAQWAHGGAASGSQQNHLFGN
QGHSLPYGLPIIAHPSRQEQMHLMQLHQHHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQQQQQQQQQQQQQTQQQHHHPHQHQQNQGPEQEAFHPLSPRTPAGTSLHSVDEYEPR
GPGRPLYQRRISSSFPDESSPVNAVNALSQQSQPSSSDPQDHPQMQHHQHPQMAYNYPPH
DNLWPSNGGGPGPFQNIPSNGAGTMAQHRDLLASKVLRQTDEQVKAEPTAAQHPHTISSL
QHQFPPLMSNKKQQQLPPQGPTEPMQAAPNLSKPPTMSYASALRAPPKPRAARPEQAKKN
SDPLSLLQELSIGSSNGSNGYYSYFK
NT seq
6201 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaggagagcggagaagtcatgtgaagaagccagcagatcgttagccaggcgg
gagtacgaggcggcagtcaaccacagcacagaggctctggtggtccttgcaccccaaacc
tcaccctccagtgcccttgtccgacagagccctccttcccttgttgctgccacgcccctt
cgcagccgtgccctgctctaccgaatcgctgccttcctacagctgaaaaactatgatgaa
gcagatgaagactgtaaacatgttctggctgaagatattacttggggagatggttcccta
caggctagtttgcgctccatgctgttggatggcagcctgcaggaggtggccagcatcctt
tctaaagccttgtacggagagccaatgaatgggattgttacaaaagatctgaccagatta
aaaatgctattctctgaaatagaggcgataaatagagatatggcaccagaatacacagat
gaccaggaggaagaggtccacgatggctggcagttccggcctcctcccagaggagtcacc
agcagcgaggagtacacgctctgtaaaaggtacttggagcagggcctgtgtcggtacggg
gcccagtgtacatcggcccactcgcaggaggagctgatggagtggcagaagcgctacgcg
tcacggctcattcgcctcaaacagcagcaggagagcaaacacttcactgaaaactacatg
gaaaccttgatagaaaagtggatgaactccctttccccagagaaagtgttaagtgacagt
ttagaaggagtgcatgttgagacgagctccagtctctcggtaacagtcgccaccaaaaaa
tcctctcactcctggatctactccttgttgtgcaagccggccagaaagctgaaccgcgtc
gctctgctgtatgatgctcaccgaccgcatttcttcatcacaagcgtgtcagcgggggaa
catctccaagttgttcctaaagagtcccaagagtggactccaaacgaggaaacgacggtg
gcagcagacaatggacttgatcactgtgtctacaaggtcgtggtgggcttcagcacagag
atctttggcaccttcaggcagaccattgtttttgatttcggctcagaacctgtgctgatg
cagcggatcatggtggatgctgcctctattgaagacctggagcacctgatggcagcaagg
cagcagctcttgatgacggcgaagcgctgggattcttcatgcaagaccattgtaggattc
attcccaatgagacaataggtgaactggagcggagcctcctttcccgctatcagatacct
ctatcagctgaccagctcttcacccagtcggtcctggacaagactctgaccaaagacaac
taccaggcccgactacatgacctgctctacatagaagagattgcacaatataaagaagtt
agcaagttcaacatcaaggtgaacttgcagctggtcaccagctttatgctgactggtatt
tctgttggagccaagtatgcccagaatggacagctctttgcacgcttcaaactcactgaa
acactttctgaggacacgttggctgggcggctagtgatgaccaaggtaaattcagttctg
ctgctgccattaggccgagaggggttcagcagccaccagccacctcctggggtcaaagag
cgtgtttatgaggctgtgattgaggagaagaccaaggactacatctttctaaggatctgt
aaagactgctgtgaggagctggggttgctgcctgacagagaattacaggtggagctccag
tttcagctcaacagactgccactatgtgagatgcagtatgccctggatcgcatcaaagat
aataacatccttttccctgatatcagcctggttcccactatcccctggagccctaacagg
cagtgggatgagcagctggatccccgtctgaatgccaagcagaaggaggccatcctggca
atcaccacacccctctctattcccctgcctccaatcctcatcattggaccctatggcacc
gggaagaccttcactctggcacaggctgtcaagcacatccttcgccaggacaacagcagg
gtgttgatctgcactcattccaacagtgcagctgacctttacattaaggattaccttcat
ccttatgttgaagcgggcaatgttcatgccagacctctcagggtatacttcaggaaccgc
tgggttaagacggtccacccagtggtccagcagtactgtctcatctccagcacacaggtc
actttccagatgcccacaagggagaacatcctcaggcaccgcgttgttgtggtcaccctc
agcacatcccagtacctctgccagctggacttggaacctgggtttttctctcatatcctg
ttggatgaagcagctcaggccatggagtgtgaaaccatcatgccttttgctctagctagc
aagaccacccgcatcgtgttggctggggaccatatgcagctcagtccatttgtgtacagc
gagtttgcacgggagcgtaatctgcatgtgtcactgctggaccggctgtatgagcactac
ccctctgaattcccctgtcgcatcctcttgtgcgagaactaccgctcccatgaagctatc
atcaactacacatcagaactgttttatgatgggaagctgatggcaagtggaaagcagcct
tcccataaggacttctaccctctcaccttcttcaccgccagaggagaggatgtccaggag
aagaatagcactgcctactacaacaatgctgaggtgtttgaaatcgtggaacgggtggag
gagttgcggaagaagtggccagttgcctgggggaagctggacgagggaagtatcggagtg
gtgtcgccatacgccgaccaagtgttccgtattcgggctgaactccgaaagaaaagaatg
cccgaggtcagcgttgaaagagtcctcaatgtgcaaggtaaacagttccgggtgctgttc
cttagcactgtgcggacgcggcatacttgcaagcacaagcagacagccatcaagcgtaaa
gagcagctagttgaggattcaacagaagacctggactatggtttcctgtccaactacaag
ctactcaacacagcaatcaccagagctcagtccctggttgcggttgttggagacccaata
gcgctgtgctctgttgggcgctgcagaaaattctgggagcactttattaccatttgtcat
gaaaacacaagcctgcatggcatcacctttgagcagatcaaggctcagcttgaggctcta
gagctcaagaagacttatgtcctcaacccactggctccagagttcatcccccgtgccctc
aggcccctgcaaggacaccagtcttcttcacaggctctccatccgcttcatcatcctcat
cctcagcatgtacagtctgcctccaacaagcaggctctacagcagcagcagcagcagcag
cagcagcagtcccctcctaaggggaaacatgcaaaccacacagagcacctaccacctgaa
ggatatgctcaacccaaccctgctgtgttgattggaaatcccattcgagcattcacacca
cccttgggtgccacaccagctggaatgggcaagtcacccagccctgtgcagaggattgat
cctcatacaggcgccagcatcctctatgttcccgctgtctacggtggaaacatggtcatg
tcaatgcctttgccattgccctggccaggttaccagaaccgctttgctgtggatcctcgc
atcatgagccacccagcggcgatggcctacaacttgaatctgctgcagacacagaaccga
ggctcccccgttccttatggtggagtaacacacccatctcctctagggatgggccagccc
agccctgataaggacctacaggctgaccctgttagaaatgggaaagtagaaggatgtcca
aagtctgagcagaaccgtcttcagactccagagaagaaaatcacagacattaaagagaaa
caggcagatttagacactggccaaagtcgaagtctggattcacagacagaagggatcatt
ggtttccccaacactctgctccatcgaaaagacccttcagctgctcagagacccctcaac
taccacctggcaccacccagcacagcgtttcctcctcatcctgccagtggaagacccttc
acccaacagtatcccatacctaggcttccttatcgagtcaaccaaccccagcacccagga
atgacccaacagaatcagcaacagcagcagctcagtcctgcctacactggtggaagccac
aacgcttcttttttcactggccctgtaaccacgcacagatctgtgcactcaccatctgtg
gatggggccgagtctggaggcgtagaggaaatgagtagctctgttaggactccaatgggg
cacccagggggccaccacccaggtctgtctcagcataacaggattagcagctttggagag
gatgggcaggacggaggcctgggagacagtttggatctccagggtagcttgcctctggag
gccctgacccagcagcagcagcagcagcagcaggctgccagactgggccagtggggggag
gcgccaggcccgttcctccagggcggtgttgcctttcctttgccccagcagcttgcccac
cttgctcaacctggaatggctcgcttctcccatcaactgcttcggacggcgagctggggg
ctcggtgccaatatggaggaagaagcttttccctctgcctccacgggtccagctttcacc
aggtacccaggcctgttgagagaaattcctcctcaggaacagcctgaatcccgggaagca
tcagagatgcaaccgccgccccagtcccgtctcctccagtatcgacagtcccagtcccgt
gcctcaggtgacccttcatcctcgttagctgccgtctccagtcatgctgctgcttttcca
tcaggaccttactcccacgacacaggtcgcaatctccttaatgacaaccttctcaacaat
caagctctacagcaacagcacccaaggaatccactttataatactggtagctatccacat
cagccgccagcccattctggcagccctcctccctcccaggtcaaataccttctccaagaa
gcccagtgggcccatggtggagctgcatctggttcacagcagaaccacctgtttggaaac
cagggccacagccttccttacggactgccaatcatagctcatcccagcaggcaggagcaa
atgcacctgatgcaacttcatcagcaccaccagcagcagcagcagcagcagcagcagcag
cagcagcagcagcagcagcagcaacagcaacaacaacaacaacaacagcagcagcagcag
cagcagcagcagcagcaacaacaacaacaacaacagcagcagcagcagacgcaacaacaa
caccaccacccacatcaacaccaacaaaatcaaggtccagagcaggaggctttccaccca
ctgtccccgagaacaccagcaggcacgtcccttcacagtgtagatgagtatgaacccaga
ggtccgggccggcctctctatcagcgccgcatctcatctagcttcccagacgaatcatct
ccagtcaacgccgtcaacgccctgtcccagcagtcccaacccagttcctcagaccctcag
gaccatccacaaatgcagcatcatcagcacccccagatggcctacaactaccccccacac
gacaacctctggcccagtaacggcgggggtcccggcccatttcaaaacattccatctaac
ggagcgggcaccatggctcagcaccgggaccttctggcttccaaggtccttcgtcagacg
gatgagcaggtaaaggccgagcccacagcagctcagcatccacacaccatcagctctctt
cagcaccagtttccccctctcatgtcaaataaaaagcagcaacagctgccgccgcagggt
cccacggagcccatgcaggccgctccgaatctgagcaagcccccaaccatgtcctacgcg
agtgccctccgtgctccacccaaaccccgggctgctcggcctgaacaggccaagaagaac
agcgaccccctttccctcttacaagagctgagtataggaagttcaaatggtagcaatggg
tactattcctactttaaatga
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integrated database retrieval system
