Cololabis saira (Pacific saury): 133444465
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Entry
133444465 CDS
T09849
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133444465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csai03021
]
133444465
03036 Chromosome and associated proteins [BR:
csai03036
]
133444465
Transcription machinery [BR:
csai03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
133444465
Coactivators
SAGA/TFTC/STAGA complex
133444465
Chromosome and associated proteins [BR:
csai03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
133444465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
133444465
NCBI-ProteinID:
XP_061578257
LinkDB
All DBs
Position
5:complement(45953031..45991951)
Genome browser
AA seq
952 aa
AA seq
DB search
MAGASDPLEDMLFNEVDEKAVSDLVGSLESQLGDRKPPAASYSDGKRDAAAVAGGQFSGK
VRGDPAGSSAEQPPQQGHPRAGSTLEPEPLSGKPVPSSTSAGAPGAAGTAGASLQTAGPT
ASPVPVTLATQPGGSGASSAGTGVSSPGLLSLNGGNTGAAKLANSPGVPPPAGTGSGSAI
VASSAGSQPGFPVPQPPVALQPSPVNGVDPKAGGVGGGGAPPSSSAPQVMNHTKILVQPA
QPGNLGSNSVILTSTPPAAPSPIITQPGTSPAPMGAAKPIMNGVTQPAVAVVRQAGPPVS
GATSIQQQRPGLVASLTRSPAPQPTLAVRPQQQTTIQLPPGFTIPPGMVLVRTETGQLVM
VPQQFLAQAQAKTQQGQAGVAQRPATPTAATTIRVSTATTAPGPAQTVRLASPTQPRMVQ
SPSTTAVQALTVAPGTTAVSVKMTPPQKSPSVITAGDTPLAKPAGMPSTPLPTTTTPPAA
SPITRVNVVSQEMQENVKKCKNFLATLIKLASHNSPSPETSKNVKALVQDLLDAKIEPEE
FTSRLQAELKSSPQPYLIPFLKKSLPALRQTLLNSQQSLTTASPAVSAVPPVPSPGSAGS
PTVRPRLPVTPAGSTVRLTTPIANASLVRAGSTSAQAVARPGVQSVQTRSPVVIGQPLRH
QATFIRGPATIIGKSPMNLAAQANQKKLSDPGGGTFRDDDDINDVASMAGVNLNEENARI
LATSSELVGTKIRSCKDEAFLPTDLLHRRILDTAKKLGVTEVQLDVVNIVSHATQSRLRS
LLEQVSVVAQHRTDGGKDEEYYEQTSDVRTQLRFFEQLERMEKQRKDEQEREILLKAAKS
RARQEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKLDSVGGAVAGSEV
ASGSGTGSSPASSSRQQLRQRITRVNLRDFILCLEQDRSTARSLTLYKALLK
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcctccgacccactggaggacatgctcttcaacgaggtggacgagaaggcg
gtcagcgacctggtcggctccctggagtcccagctgggcgacaggaagcctcccgcggcg
tcgtattccgacgggaagcgggacgcggcggcggtcgccggcggccagttctcagggaaa
gtgcgcggtgatccagcggggtcctccgcggagcagccgccgcaacaagggcatccgaga
gcgggctcgaccctggagccggagccgctctccggcaagcccgtcccctcctctacctct
gccggggcccccggggccgcggggaccgccggggccagcctgcagacggcgggaccgacg
gcttcgcccgtccccgtaactttggccactcagcccggcggctccggagccagctccgcg
gggaccggggtctcctctcccgggctgctgagcctgaacggcggcaacacgggggctgca
aagttggccaactcgcccggggtgcccccccccgccgggaccggctccggctccgcgatc
gtcgcctcctccgcggggtcccagcccgggttcccggtgccccagcccccggtggccctg
cagcccagcccggtgaacggggtggaccccaaggcggggggtgtggggggtgggggtgcc
cccccctccagctccgcccctcaggtcatgaaccacaccaagatcctggtgcagcccgcc
cagccgggcaacctgggctccaactccgtgatcctgaccagcaccccccctgcagccccc
tcccccatcatcacccagcccggcaccagccctgcacccatgggtgctgccaagcccatc
atgaacggggtcacccagcccgccgtggccgtggtgaggcaggcgggcccccccgtgagc
ggggccacctccatccagcagcagagacccgggctggtggccagcctgacccgctccccg
gccccccagcccaccctggccgtgcggccccagcagcagaccaccatccagctgccgccc
ggcttcaccatccccccgggaatggtcctggtccggacagagacgggtcagctggtcatg
gtcccgcagcagttcctggctcaggctcaggccaagacgcagcagggccaggcgggggtg
gcccagagacccgccacccccacggctgccaccaccatccgggtcagcacggccaccacg
gcgccgggccccgctcagactgttcgcctggcgtcccccactcagccccggatggtccag
tctccctccaccactgctgtccaggccctcactgtggcccctggcaccacagcagtgtct
gtgaagatgacacctcctcagaagagcccgtcggtgatcacagcaggggacacgcctcta
gccaagcctgccggcatgccgtccacccccctccccaccaccaccacccccccggccgcc
tcgcccatcaccagagtcaacgtggtctcacaggagatgcaagaaaacgtgaaaaaatgc
aagaatttccttgctacactcatcaagctggcttcccacaattccccttccccagagacc
tccaagaatgtgaaggccctggtgcaggacctgcttgatgcaaagattgagccagaagag
ttcacctcccgactgcaggctgaactgaaatcctctccgcagccctacctcatccccttc
ctcaagaaaagcctccccgccttgcgtcagactctgctgaacagccagcagtctctgacc
accgcctcgcccgccgtctctgccgttcctccggtccccagccccggctctgccggctcc
cccaccgtcagaccgcggctgcccgtcaccccggcaggcagcaccgtccgcctcactacg
cccatcgcaaacgcatccctggtacgagcaggatccacatctgcacaggccgtggccaga
ccaggagtccagtctgtgcagactcgctcccccgtcgtcatcggtcagccgctcagacat
caagctacatttatacgaggacctgcaaccataatcggcaaaagtcccatgaacctggca
gctcaagccaatcagaagaaactgagcgacccggggggcgggaccttcagagatgacgac
gacatcaacgatgtggcgtccatggctggcgtcaatctcaacgaggagaatgcccgtatt
ctagcaaccagctcggagctcgttggcacaaagatccgctcgtgtaaagacgaggccttc
ctccccaccgacctgctgcaccgccggatcctagacacagctaagaagcttggcgtgacc
gaggttcagctggacgtggtcaacatcgtctctcacgccacccagtccagactgcgttct
ctgctggagcaggtttccgtcgtcgctcagcaccgcacagatggcggcaaagatgaagaa
tactacgagcagacgtctgacgttcgtactcagctccgtttctttgagcagctggagcga
atggagaaacaaaggaaagacgaacaagagcgagagatactgctgaaggcggcaaagagt
cgtgcccggcaagaagatccagagcaggctcggctcaagcagaaggccaaagagatgcag
cagcaagaactagcgcagatgcgacagcgagacgcaaacctcacggctctcgctgcaatc
gggccgcgcaagaagcgcaaactggactcagtgggtggagcagtggccggcagtgaggtg
gcctcaggctcaggtacaggctcatcgccagcctcctcctcgcgccagcagctccggcag
cggatcactcgcgttaacctcagggacttcatcttgtgtctggagcaggaccgcagcaca
gcccgctctctcacgctctacaaggccctgctgaaatga
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