Cololabis saira (Pacific saury): 133444784
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Entry
133444784 CDS
T09849
Symbol
rfwd3
Name
(RefSeq) E3 ubiquitin-protein ligase RFWD3
KO
K15691
E3 ubiquitin-protein ligase RFWD3 [EC:
2.3.2.27
]
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csai04121
]
133444784 (rfwd3)
Enzymes [BR:
csai01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133444784 (rfwd3)
Ubiquitin system [BR:
csai04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133444784 (rfwd3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_RFWD3
Beta-prop_WDR5
zf-RING_2
Beta-prop_THOC3
WD40_CDC20-Fz
zf-RING_UBOX
zf-C3HC4
EIF3I
zf-C3HC4_2
WD40
zf-ANAPC11
Beta-prop_WDR3_1st
WDR55
zf-rbx1
Beta-prop_EML_2
WD40_Prp19
zf-C3HC4_3
zf-RING_5
Rtf2
Beta-prop_RIG_2nd
zf-RING_11
Beta-prop_WDR75_1st
zf-C3HC4_4
Beta-prop_WDR36-Utp21_1st
CFAP43_N
zf-RING_Vps41
Beta-prop_EIPR1
NSRP1_N
ANAPC4_WD40
zf-Nse
Beta-prop_WDR36-Utp21_2nd
Motif
Other DBs
NCBI-GeneID:
133444784
NCBI-ProteinID:
XP_061578669
LinkDB
All DBs
Position
5:complement(42399517..42419551)
Genome browser
AA seq
714 aa
AA seq
DB search
MEAMEVDSPLELRGRIISNPDGTVALAGPAGDANAAHVISDSGSSTEVDEDDDNDTEHGA
ARATHRLPATWAFSQRAVDGPAAAPSLVQGTLIQRRLRQGLRVHYPSQTATPSRGFPDFQ
LRAPAASVAEPGSGSSTDISESEDEDERRERTSASAQPIDPVLSADPLPNAPTQHTQPLE
PSTDSSSISDSKRTEAQVQDCQSTPGAQTSLPMFQSEENEGDTCTICFEAWTTAGEHRLS
ALRCGHLFGYTCITRWLKAQGSTAKCPQCNKKAKRSDIVLLYAPKLRALDNSEQQTLKKS
LELEQSLRRKAELESAQYKLKLQVVTNKYGQAQQELQELKALMVQTDRSSVSSSSSSNSL
FLSLSQRDGSRTRQYSFSKAVLVSQTGGCRVLSYCEPLSCLLASQPSPHSTLVPGCGVKK
VSVLNMKASQYIPIHSKQIRGLSFNHRNDSLLLSAALDNTVKLTSLLTNTVVQTYNAGKP
VWSCSWCLDNSNYVYAGLSNGSVLIYDTRDTSTHVQELEPLRSRCPVASLCYVPRAASCM
FPSGGLIAGSLEGGCFWEQVNDTTYRPHLLPLENSGCIDIQVEAESRHCLVTYRPGRSNP
SLRCVLMALNQTPQQDSSQPSSCSCTPVQTFSAGSSCKLLTKNAVFKRPDGSGMLVCAGD
EASNSTMVWDASTGSLLQKLPADLPVLDISPFSVNGEHFLVSLTEKMLKLYKWE
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggaggccatggaggtggattcccccttggaactgcgaggaagaattatctcaaacccg
gatggtaccgttgcacttgctggtccagctggagatgccaatgcagcgcacgtcatttca
gactctggcagcagcactgaagtggatgaagatgatgacaatgatacagaacacggagct
gctcgggccactcacagactacctgccacttgggcctttagccagagggcagtagacgga
cctgcagctgcaccgtcactagttcaggggacactcatacagaggagactcagacaaggc
ctccgggtgcattaccccagccaaacggcaacaccttccaggggtttcccagactttcag
ctgcgagccccagccgccagcgtagcagagccggggtctggtagcagcaccgacatcagt
gagtccgaggatgaggacgaaagacgagagagaacatctgccagcgctcagcccatcgac
cccgtcctctctgctgatcctcttcctaacgcccccacccagcacacacaaccactggag
cccagcacagactccagttcaatctcagacagcaagaggacggaagcacaagttcaggac
tgtcaatcgaccccaggagcccagacttcacttccgatgtttcagagtgaggagaatgaa
ggcgacacttgcaccatctgctttgaggcgtggacgacagcgggagagcatcgactgtcg
gcgctgcgctgcggtcacctctttggctacacctgcatcacgcgctggctcaaagctcag
ggatccacggctaaatgtccacagtgcaacaagaaagccaaacgttcagatattgtgctg
ctgtatgcgccaaagctgagagccctggacaactcagaacaacagacgttaaagaaatct
ctggagctggagcaatctctgaggaggaaagcagagttggagtcagctcagtacaagctt
aaattgcaggttgtcactaacaaatatggacaagcacagcaggagctccaggagttgaag
gcgttgatggtccagactgacaggagctccgtctcctcctcttcctcgtccaactccctg
ttcctcagcctgtctcagagagacggctccaggaccaggcagtacagcttctccaaggcc
gtgctggtttctcagacgggcggctgtagagtcttgtcctactgtgaacctttgagctgc
ctcctggcctcgcagccctcccctcactctacactagtgcctggctgcggggtgaagaag
gtgagtgtgctaaacatgaaagcaagccagtacattcccattcacagtaaacaaatcaga
ggactgtcgttcaaccaccggaacgacagcctgctgctgtcggctgcgctggacaacacc
gtcaagctgaccagtcttctaaccaacaccgtggtccagacctacaacgctgggaagccc
gtgtggagctgctcctggtgtctggacaacagcaactacgtgtacgctggtctgagcaac
ggctcagtgctcatctacgacaccagagacaccagcacacacgtccaggagctggagccg
ctacgctccaggtgtcccgtagcgtctctctgttacgtcccgcgggcggcgtcctgcatg
ttcccctctggcgggctgatcgctggctccctggaaggaggatgtttctgggagcaggtg
aacgacaccacctacagaccacatctcctgccgctggagaacagtggctgcatcgacatc
caggtggaggcggagagcagacactgtctggtcacatacaggcccggacgctccaaccca
tctctgcgctgcgtcctcatggctctaaaccaaacacctcagcaggactccagccagccc
tccagctgctcctgcacaccagtccagactttcagtgccggctcatcgtgcaagttactc
accaagaatgccgtgttcaagaggccagacggaagtgggatgctcgtctgtgctggagac
gaggcctccaactccaccatggtttgggacgccagcactggctctctgctacaaaaactt
ccagcggaccttccggtgttggacatcagccccttctcagtgaatggcgaacactttctt
gtctctctcacggagaagatgctgaaactctacaagtgggaatga
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integrated database retrieval system
