Cololabis saira (Pacific saury): 133444907
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Entry
133444907 CDS
T09849
Symbol
tdrd12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
csai03036
]
133444907 (tdrd12)
Enzymes [BR:
csai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
133444907 (tdrd12)
Chromosome and associated proteins [BR:
csai03036
]
Eukaryotic type
Gene silencing
piRNA pathway
133444907 (tdrd12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
CS
Motif
Other DBs
NCBI-GeneID:
133444907
NCBI-ProteinID:
XP_061578783
LinkDB
All DBs
Position
5:44278620..44320831
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AA seq
1383 aa
AA seq
DB search
MFKISLVKVDNPSCLWARVIQGPIGDAEGREQYNKLLVQMNLFYHDATQDREKLRPKSLQ
DGQVCVVYWAGMKSWCRAVVESVITNVIPLHAHCLLVDHGERIMVPSCQIRVAMAHFLQL
PFWVRKFHLAGIRPTTLKVAVFGEMAELVPSSQWDSSATLYLHNLLQASSQRDAVLLEAV
SDSTPIELYLSVRDIKICVNDELVAKKFAYYSRDTTGSNGLDAADRIPVMLSSNILTQII
SNKAQAQEPSGKNTTTDSVSQPFEPVTDEGDGRSEVTEEQKSPNSQCGNGSEPAAAEGDS
SEDTDSSLAEGLNKHLSEFSFLKFLNPENTHQQTPPDVAENDEPNGCLAEEMTVIDTNQD
LHAASTAPETDSDESVNECGAAAGEPMRKSAEHWACLRLLEWLNPEPLNPDPDKTDNTVS
PTDPKMSRVFVHSALPVEPCNSLEDAPLTDSLRWELQRKQHHTLSAAERHSWPAVARGLN
TIIVSHDCDQRLSYLFPLLTHILLNSMFSSLSSSSGPIAVVLCPGWERVQVVYDMLMESR
VSRTLHPVSLLLGIAKDEAKHVKIPQNCLLLLTTPFSLVRLLSCHLFLFLRLYHLVLDEA
DQLFTLAPDQMATILQHFQKISSSKDKASCPQQLVAAAKRWTHHMEDLIASHMPYPCIVI
TVPVEAALYGNVQQVISMTLENSKISGMLGMLDFSPDVCQKTVIVANSVQEVEDVFKAVS
NKSAFTLKTHEGLTHLFDFAIQQWGKTIGRGMNVILVTTNECLKYLGIRDANCVVHYGFP
TSPRLFGTRLFCMAENYRNLSERDQSQSCSGVSRSVLLISEKNSRHLVGVLRYLKRTSAL
LPPELLSFAEGVTAACEDQKTNRPLCTYMKSFGFCRENGSCPDRHRFNSQLDQSRLPESG
VIEVIPLHIKTASFFYGRLIRKENRSFDSMASEMALFYSDKKPGAKELLEGGLYAVEEDN
VFHRVKILSLPDNNGSLFFSVLVRFIDVGKEVEVKSHQILQLPDGFHSLPGQTTEFIICR
VKPVDGEADWHPKVTRAIRQKIQGLQHQARAVLSLHNTIFVDPMIRVTQVPGTKTVINEY
NVQTEILNTGMGVRNPEHLDLLKDLCRDGLVSRDDGQTSTLDDGLLSSEVGMKPEEALLA
EAFRTVAAVNPPLVQPCEPLPSAVSTNQSQVQDPAPQVHLVCEQEPQLDIKPNTTSAERM
ESIKDEGELYSTGVPATCQSLCQNGVLEGEDETIIRQLVSSNETKSFHPQVQWYQTSGSV
VVTVKLMNPESQRCDFYPDRIIYSGRIGGRCYRADLELHQSIAADLSCWEMKANEPVLKL
VKEQPGNWDRLVKNKNIFVSYNMEHFEEDDDDDDKPPDGPYFEGNTGHCWSTDSESSCSS
DSD
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaaatatccctggtgaaggtggacaatccatcttgcctctgggctcgggtcatt
cagggtccaattggagatgcagagggcagagaacaatacaacaaactcctggttcagatg
aatcttttctaccatgatgccactcaggacagggagaagctgagacccaaatcgctacag
gacggacaggtgtgtgttgtgtactgggcggggatgaagtcctggtgtcgtgcagtggtt
gagtcggtcatcaccaacgtgatcccacttcatgctcactgcctcctggtcgatcacgga
gagagaattatggttccttcatgccaaatccgagtcgcgatggcacatttccttcagttg
cctttctgggtgaggaagttccacttggcaggaatcagaccaacaactctcaaagtggct
gtatttggagagatggcagagcttgttccatccagtcagtgggacagttctgcaacgctc
tacctgcacaatctgcttcaagcgtccagccagagagacgctgtgttgcttgaagccgtg
tctgactccacacccatcgaactctacctgtctgtcagggacatcaagatatgtgtgaat
gacgagttggtggctaagaagtttgcatattacagtagagacacaactggcagtaatgga
ctggatgcagcggaccgaatacctgtcatgttgtcctccaacatcttaactcagatcatc
tcaaacaaagcacaagctcaagaaccttctggtaaaaacacaactacagactcagtgagc
caaccgtttgaaccagttaccgatgagggagacggacgatcagaggtcacagaagaacaa
aagtctccaaacagccaatgtgggaacggctcagaacctgctgctgcagagggtgactca
tcagaagacacagactcctctctggctgaaggtctgaacaaacacctcagtgaattcagc
ttcctgaagtttttaaatcctgagaacacccaccaacagacgcctcctgatgtggcagag
aatgatgagcctaacggctgtttggctgaagagatgactgtgatcgacacgaatcaagac
ctgcatgctgccagcacagctccagaaactgattcagatgaatctgttaatgagtgtgga
gccgcagcaggagagccgatgaggaagagtgcagaacactgggcatgcctacgccttctg
gagtggttgaacccagagcctctcaatcccgatccagacaaaacagataacacggtttcg
cccactgatccaaagatgagtagggtttttgtgcactcggccctcccagtagaaccctgc
aacagcctggaagacgccccgttaacagactccctccgctgggagttgcagaggaaacag
caccacacgttatctgcagctgagcgccacagctggccagctgtggctcgaggactcaac
accataatcgtctcccacgactgtgaccagcggctcagctacctcttccctctcttaact
catatcctgctaaactccatgttctcctctctcagctccagctcagggcccatagccgtg
gtgctgtgtccgggctgggagcgggtccaggtggtgtacgacatgctgatggagagcagg
gtgagccgaaccctccacccagtctctctcctgctgggtatcgccaaggacgaagccaaa
catgttaaaatcccccaaaactgtctcctgttactgaccaccccgttctccctggtgcgt
ttgctgtcttgccacctcttcctcttcttgaggttgtatcacctggtgctggatgaggcc
gaccagctctttactcttgctcctgatcagatggcaaccatcctgcagcatttccagaaa
atttcctccagcaaggacaaagcttcctgccctcagcagctcgtcgctgcagcaaaaaga
tggacgcatcacatggaggatttgatagcgagtcacatgccgtacccctgcattgttata
accgtccctgtggaagctgctctctacggaaatgttcagcaggtcatcagcatgactctg
gagaacagtaagatctccggcatgctgggcatgctggatttcagccctgacgtttgccag
aagactgtgattgtagcaaactctgttcaggaagtagaagatgtatttaaggctgtgagc
aacaaatcagctttcactctcaagacccatgaagggttaacgcacctgtttgactttgcc
atccagcagtggggaaaaaccattggacgtggcatgaatgttattctggtgaccaccaac
gagtgtctgaagtatctcggcatcagagatgcaaactgtgtcgtccactacggatttcca
acttctcccagactgtttggcaccagactcttctgcatggctgaaaactaccgaaatctt
tcagagcgagatcagagccagagctgctctggtgtcagcaggtcagtgctgctgatctca
gagaagaacagccgccatttggttggagttctgcgctaccttaaacgcaccagcgccctg
ctgcctcctgagctgctgtccttcgctgagggagttactgcagcctgcgaggaccagaaa
accaaccgcccactctgcacctacatgaagagctttggattctgcagagagaacggttcg
tgtcctgatcgccacaggttcaactcccagctggatcagtcgcgtctgcctgaatctgga
gtcatagaagttatacctctccacataaagacggcatcattcttctacggccgtctgatc
aggaaggagaacagaagttttgattcgatggcttcggagatggctttgttttattctgac
aaaaaaccaggagccaaggagctgctggaaggagggctgtacgccgtggaggaggacaac
gtcttccacagagtgaagattctctctttgccggacaacaatgggagtctgtttttctcc
gtcttggttcgcttcattgatgtggggaaagaggtggaagtaaagtctcatcagatcctt
cagctgccggacgggtttcactctctgccgggccaaaccacggagttcatcatctgcagg
gtgaagcccgttgatggagaggctgactggcaccccaaggtcacaagagccatcaggcag
aagatccagggtctgcagcaccaggccagagcagttctcagtctgcacaacaccatcttt
gttgatccaatgatccgggtcacccaggttccaggtacaaagactgtcatcaatgagtac
aacgtccaaactgagatcctgaacacggggatgggagtcagaaaccccgaacatctggac
ctgctgaaggacttgtgtcgggatgggctggtcagcagggatgacggccaaacatccacg
ctggatgatgggttactgtcttcggaggtcgggatgaaaccagaagaagcacttctggct
gaagccttcagaactgttgctgctgtaaaccctcctcttgttcagccatgtgagcctctc
ccttcagcagtttctacaaaccagtcccaggtccaggatccagctcctcaagtccactta
gtttgtgagcaggagccccagctggacataaagccaaataccacatccgctgagaggatg
gagagcatcaaagatgaaggagaactttattcaacaggagttcctgccacctgccagagc
ctctgtcaaaacggtgtgctggaaggtgaagatgaaaccatcatcaggcagcttgtttcc
agtaacgagacaaagagtttccacccccaggtccagtggtaccagacctccggctctgtg
gttgtaacagtgaagctgatgaacccggagagtcagcgctgtgatttctaccctgacaga
atcatttacagcggcagaatcggtggtcgctgctaccgggccgacctggagctgcaccag
agcatcgcagccgacctgagctgctgggaaatgaaggccaacgaaccagttctcaaactg
gtgaaggagcagccgggaaactgggacagactcgtcaagaacaagaatatttttgtgagt
tacaacatggagcactttgaagaggacgacgacgacgacgataaaccgccagacggtccg
tattttgaggggaacacaggacactgctggtccactgattcagagagcagctgcagcagc
gacagcgattga
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