Cololabis saira (Pacific saury): 133445716
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Entry
133445716 CDS
T09849
Symbol
ift88
Name
(RefSeq) intraflagellar transport protein 88 homolog
KO
K16474
intraflagellar transport protein 88
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
csai03037
]
133445716 (ift88)
Cilium and associated proteins [BR:
csai03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
133445716 (ift88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_8
TPR_19
TPR_14
TPR_6
TPR_16
TPR_7
TPR_11
TPR_9
ANAPC3
TPR_17
ARM_TT21_4th
TPR_10
TPR_CcmH_CycH
ARM_TT21_5th
ARM_TT21_N
TPR-S
ARM_TT21_C
DUF2225
ARM_TT21
HAT_PRP39_C
SHPRH_helical-1st
TPR_15
HEAT_Nup120
ARM_TT21_2nd
RPN7
Consortin_N
RNPP_C
DUF2989
NatA_aux_su
Mad3_BUB1_I
Motif
Other DBs
NCBI-GeneID:
133445716
NCBI-ProteinID:
XP_061579063
LinkDB
All DBs
Position
6:complement(5533348..5559481)
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AA seq
818 aa
AA seq
DB search
MENLHLAGEEDDLYSGYNDYNPAFDSEELENDAGFQQAVRTSHGRRPPMTAKFPGTAIGG
RPLASSYGSRIPMVSSQSRPMTGALQDGATRPMTAVRAAGYTSSLTRGSAFDPLGQSRGP
APPLEVKNEDTPEEKIKILEKKVKDLIEESCMAQSVGNLQLALEKAKEAGRKERALVRQR
EQSGNVEHISVDLTFSVLLNLANQYANNEMYTEALNTYQVIVKNKMFSNAGRLKINMANI
YFKQKNYPKAIKFYRMALDQISNAHKEIRIKIMQNIGVVFVRLGQYSDAITSFEHIMSDS
PNIRTGFNLILCYYAIGDRERMKKTFQKLISVPLGIDDEDKYIPSTDDTSTNMVIEAIKN
DKLHQMERDIKALAEKFIMTAAKLIAPAIETSFASGFDWCVDMVKSSQYVELANDLEINK
AITYLRQKDFNQAVETLKTFEKKESRVKSAAATNLSFLYFLEKDYDQADRYADLAMTADR
YNPAALINKGNTLFVKQEYEKAAEFYKEALRNDSSCTEALYNLGLTYKGLKRLEEALDCF
LKLHAILRNSAQVMYQLADLYEQLENLPQAIEWLMQVISVTPTDPHVLAKLGKLHDDEGD
KSQAFQYYCESFRYFPSNIDVIMWLGAYYIETQFCEKAIQYFERATLIQPTQVKWRLIVA
SCYRRSGNYQKALETYKHIHHKFPENAECLRFLVRLSTDMGLSEVQEYATKLKKVEKMKE
IREQRVKSGREGSARGRREGREGSADSSSSTKGERLSAKMRSLPGSNEPYEASSPKELDV
SYVDPLGPQMERPKTGARKRVEDDDFADEELGDDLLPE
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacctgcatctggctggagaggaggatgacctttactctggatataacgactat
aatccggcatttgactcggaggagttggagaacgatgcgggcttccagcaagcggttcgg
actagtcatggaagaagacctccgatgacggcaaagttccccggcactgccattggaggg
cgacctttagcttcatcttatggatctcggatccctatggtctcttcacagagcagaccc
atgactggagctttgcaggatggagcaacccgaccaatgactgctgtcagagcagcaggt
tacacctcctccctgactcgtggttcagcctttgatcctttgggccagtccaggggcccg
gcacctccgcttgaagtgaagaatgaggacacacccgaggagaagataaagatcctggag
aagaaagtaaaggacctgatagaggagagctgcatggcacagagtgtgggaaacctacag
ctggcccttgaaaaagccaaagaggcaggaaggaaggagcgagcactggttcgacaaaga
gaacagtctggcaatgtggagcacatcagtgtagacctcaccttctctgttttgcttaac
cttgcaaaccagtatgcgaacaatgaaatgtacacagaagccctgaacacctaccaggtc
attgtgaagaacaagatgttcagtaatgcaggccgtctgaaaatcaacatggccaacatt
tacttcaaacaaaagaactaccctaaagccatcaagttctaccgcatggcactggatcag
atttccaatgcccacaaggagataaggatcaaaatcatgcaaaatattggcgtggtcttc
gtccgcttgggccagtattctgatgccatcacatccttcgagcacatcatgagtgacagt
cccaacatcaggacaggcttcaaccttatcctgtgctactacgccattggtgacagagag
aggatgaagaagacctttcagaagctcatctcggttcctctgggcattgatgatgaagac
aagtatattccatctactgacgacaccagcacaaatatggttattgaggccatcaagaat
gacaagcttcatcagatggaaagagatataaaagccctggctgagaagttcatcatgact
gcagccaaactcatcgccccggccatcgagacttcttttgctagcggatttgactggtgc
gtggacatggtgaagagttctcagtatgttgaacttgccaacgatctggagatcaacaaa
gccatcacctacctaaggcagaaggactttaatcaggcggtggaaaccttgaagacgttt
gagaagaaggagagcagagtgaagagcgctgcagccaccaacctctcttttctctatttt
ctggagaaagactacgaccaggctgacagatacgctgacctggccatgactgctgaccgt
tataaccctgccgcactgatcaacaagggcaacacgctgtttgtcaagcaggagtacgaa
aaagcagcagaattctacaaagaagcactgaggaacgattcctcctgcaccgaagcgctt
tataacctcggcctgacctacaagggactgaagcgcttggaggaagccctggactgtttc
ctgaaacttcatgcaattctgaggaacagtgctcaggtcatgtaccagctagctgacctc
tacgagcagttagagaatcttccacaggccatcgaatggctgatgcaggtcatcagtgtg
actcccactgaccctcacgtactggccaaactggggaagctgcatgatgacgagggagac
aagtcccaggctttccagtattactgtgagtccttcaggtacttcccctccaacattgat
gtgatcatgtggctcggggcttactacatcgagacacagttctgtgagaaggccatccag
tactttgaaagagccacacttatacaaccaacacaggtgaagtggcgactaatagtggca
agctgttacagacgaagtggaaactaccagaaggctctggaaacgtataaacacatccac
cacaagtttcctgaaaatgcggaatgtttgcgtttcctggtgaggctctccactgacatg
ggtctgagcgaggtccaggagtacgccaccaagctgaagaaggtagagaagatgaaggag
atccgagagcagagagtgaagtcggggcgtgagggcagtgcgagaggacgcagagaaggc
agggagggcagcgcagacagcagcagcagcaccaaaggagagcgtttgagcgccaagatg
aggtcacttcctggttccaacgagccctacgaagccagcagcccaaaagagcttgacgtg
tcttatgtggacccactggggccgcagatggagagaccgaagacgggtgccaggaagcgg
gtggaggatgatgactttgcagatgaagagcttggagacgacctgttaccagagtag
DBGET
integrated database retrieval system
