Cololabis saira (Pacific saury): 133445769
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Entry
133445769 CDS
T09849
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133445769 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csai03041
]
133445769 (sf3b1)
03036 Chromosome and associated proteins [BR:
csai03036
]
133445769 (sf3b1)
Spliceosome [BR:
csai03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
133445769 (sf3b1)
Complex B
133445769 (sf3b1)
Complex C
U2 SnRNP specific factors
133445769 (sf3b1)
Chromosome and associated proteins [BR:
csai03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
133445769 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
GST_N_4
DUF2298
Motif
Other DBs
NCBI-GeneID:
133445769
NCBI-ProteinID:
XP_061579166
LinkDB
All DBs
Position
6:complement(8596314..8610462)
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AA seq
1313 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKATLVEDAGQGVGLDSTGFYDQEIYGGSDSRFAGYVTSI
AANEQEEDEEEDSTSLLGQKKPGYHAPVAILNSIPQSDEQYDPFAEHRPPKIADREDEYK
ARRRHTIISPERLDPFADGGKTPDPKLQFRTYVDVMLEQKVSKEEREIRQQLAEKAKSGD
LKAVNGSAAAVPAAKRKRRWDQTADQTPSNSTPKKVSSWDQADSNAETPGHTPAHTPSNS
RWDETPGRPKGSETPGATPSTRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATGSVRKN
RWDETPKTDRETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQMGSSTP
LLTPGKTPLGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFPEG
YKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQVEDRTTKQMNDQPSGNLPFLKPDD
IQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPL
FNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARV
EGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAV
CKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAA
LAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVML
ILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYR
QLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQ
LIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQA
ADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTP
PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKK
AIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPA
LMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAV
VQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVALGPCRMLQYCL
QGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDDKNVYVRYELEYVL
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacacacgaagacatcgaggcccagatcctggagatccagggg
atgaaggccaccctggttgaggatgccgggcagggagtgggcctagattccactggcttc
tatgaccaggagatttacggaggcagtgacagccgttttgctggatatgtaacttctatt
gctgccaacgaacaggaggaagatgaagaagaggattcaacaagcttgttgggacagaag
aagccaggataccatgcaccagtggcaatactaaactcaattcctcagtcagatgagcag
tacgatccatttgcagagcatcgcccaccgaagatcgcagatcgggaggatgaatacaaa
gctcggcgcagacacacgatcatttcacctgagcgtctcgacccttttgcagatgggggc
aaaacgccagaccccaagctgcagttcaggacatacgtggacgtcatgttggagcagaaa
gtgtccaaagaggagagagagattcgtcagcagctggctgagaaggccaaatcaggggac
ctcaaagctgtcaacgggtccgctgccgccgtacctgctgcaaagcgtaaacgtcgctgg
gaccagacagctgaccagacgccgtccaattctacacccaaaaaggtttccagctgggac
caagctgactccaacgccgagactccaggacacacacctgcacacacaccttcaaacagc
agatgggatgaaaccccaggtcgccctaaaggcagcgagacaccgggggccactcccagc
acccgtatgtgggacccgacccccagccacacccctgctggtgctgccacccctggcagg
gacacacccggccacgccactcctggtcacggaggagccacaggaagtgttcgaaagaac
cgctgggatgaaaccccgaagacggatagggagacaccgggacacgggagcggctgggcc
gaaaccccaagaacagacagaggagacgagtctgtgggtgagactcccaccccaggagcc
agtaagaggaagtctcggtgggatgaaacccctgccagtcagatgggatcctcaacacca
ctcctgactccaggaaaaactccactgggaacaccagctatgaacatggcaaccccgaca
cctgggcacttgatgagcatgactccagagcagctgcaggcatggaggtgggagagagag
attgatgagaggaaccggccccttacagacgaagagcttgatgccatgttcccagaggga
tacaaggttttgcctcctccagcaggctacgtgccgatccgtactccagcccgtaagctg
tcagctactcccacacctatcggaggcatgacaggcttccacatgcaggtagaggaccgc
accaccaaacagatgaacgaccagccctcaggaaacctccccttcctcaaacctgacgat
atccagtactttgacaaacttctggttgaggtggacgagtccaccctgagcccagaggag
cagaaggaaaggaagatcatgaaactgctgttgaagattaagaatggaacaccacccatg
agaaaggccgctctgcgtcagatcaccgacaaagctcgtgaatttggagcaggtcccctc
tttaatcagatcttgccgttgctcatgtcacccaccctggaagaccaggagcgccatctg
ctggttaaagtcattgaccgcatcctctataaactggatgacctggttcggccatacgtt
cacaagatccttgtggtgattgagccgttgctcattgatgaagactactatgccagagtt
gaaggcagagagatcatttctaacttggcaaaggctgctggtttggcaaccatgatctcc
acaatgcgacctgacatcgacaacatggatgagtacgtcagaaacacgacagcccgagcc
ttcgcagtggtggcttcggccctcggcatcccttccctcttaccgtttctcaaagctgtg
tgtaaaagcaagaagtcatggcaggctcgacatactggcatcaagatcgttcagcagatt
gccatccttatgggctgcgccatcctgcctcacctgcgcagcttggtggagattattgaa
cacggtctggtggatgagcagcagaaggtgaggaccatcagtgccctggctattgctgcc
ctcgctgaagccgctacgccctacggtatcgagtctttcgactctgtgctgaagcccctg
tggaagggtatcaggcagcacagaggaaagggtctggctgctttcctgaaggctattggt
tatctgatcccactgatggatgccgagtatgcaaactactacaccagagaggtgatgttg
atcctcatcagagagttccagtcccccgatgaggagatgaagaagattgtgctgaaggtg
gtgaagcagtgttgcgggactgatggtgtggaagcaaactacataaagacagagattctt
ccccccttcttcaaacacttctggcagcacaggatggccctggacagacgcaactataga
cagctggtggacacgacagtggagttggctaacaaagttggagcagctgagatcatttct
cgcattgtggatgacctgaaagacgaggctgagcagtacaggaagatggtgatggagacc
atcgagaaaatcatggggaacctgggagccgctgacatcgaccacaagctggaggagcag
ctgattgacggtatcctgtacgccttccaggagcagaccacagaggattcagtgatgctg
aatggtttcggtacagtcgtgaacgccctcggaaagcgcgtgaagccgtatttgcctcag
atctgtggtacggtgctgtggcgtctcaacaacaagtcggccaaagttcgtcagcaggcg
gcagatctgatctcccgcacggcggtggttatgaagacctgtcaggaggagaagctgatg
ggtcacttgggtgtggtgctgtacgagtacctgggagaggagtaccccgaggtgttgggc
agcatcctgggggcgctgaaggccatcgttaacgtcatcggaatgcacaagatgactcca
ccaatcaaagacctgcttccccgtttgactcccatcctgaagaacagacacgagaaagtc
caggagaactgcatcgacctggtgggcaggatcgccgacaggggtgctgaatacgtgtcg
gccagggagtggatgaggatttgctttgaactgctggagctgctcaaggcgcacaaaaag
gccatccgcagagctactgtcaacacatttggttatatcgccaaagctattggcccccac
gacgtcttggccactctgctcaacaacctgaaggtgcaagagcgtcagaaccgagtctgc
acaactgtggccatcgccatcgtggctgagacctgttcacctttcacagtgctgccggcg
ctcatgaacgagtacagggtgcctgaactcaacgtgcagaacggcgttcttaagtcgctc
tctttcctgttcgagtacatcggcgagatgggcaaggactacatctatgctgtcacccct
ctgctggaagatgccctcatggacagggacctggtccacagacagacggccagtgccgtt
gtccagcacatgtctctaggcgtctacggtttcggctgcgaggactccctcaaccacttg
ctgaactacgtgtggcccaacgtgtttgagacgtcgcctcacgtcatccaagcagttatg
ggcgccctggaggggctgagggtcgccctggggccctgccgcatgctgcagtactgctta
cagggtctcttccacccggcccggaaggtgagggacgtctactggaagatctacaactcc
atctacatcggctcccaggatgctctgatcgctcactacccgcaggtctacaacgacgac
aagaacgtctacgtccgctatgagctcgagtacgtcctgtaa
DBGET
integrated database retrieval system
