Cololabis saira (Pacific saury): 133445899
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Entry
133445899 CDS
T09849
Symbol
mid1
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
133445899 (mid1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csai04121
]
133445899 (mid1)
Enzymes [BR:
csai01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133445899 (mid1)
Ubiquitin system [BR:
csai04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
133445899 (mid1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
zf-B_box
ANCHR-like_BBOX
fn3
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
PRY
zf-RING_2
zf-C3HC4_3
Ig_DSCAM-DSCAML_C
zf-RING_5
Pur_ac_phosph_N
Motif
Other DBs
NCBI-GeneID:
133445899
NCBI-ProteinID:
XP_061579403
LinkDB
All DBs
Position
6:17099774..17130903
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AA seq
671 aa
AA seq
DB search
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCTPSEPIQSISAFQCPTCR
YAITLNQRGLEGLKRNVTLQNIIDRYQKASLSGPNSPSECRRERATVPDSSKAMTSPSDR
VQCQFCEQDPPQNAVKTCVTCEVSYCEECLKATHPNKKPFTGHRLIEPLLDSHLRGLMCL
EHDDEKVNMYCVTDEQLICALCKLVGRHRDHQVAALSDRYDKLKQALDTNLSNLMKRTSE
LESLMGKLIQTCQHVEVNASRQENKLLEECDVLINIVQQRRQIIGTKIKEGKAVRLRKLA
QQIAGCKQCIERSSSLITQADHTLKETDHARFLQTAKNICERVSMATASSQVLLPEINLN
DTFDTFALDFTREKKMLESLDYLTAPNPPVIREELCTASYDTITVHWTSDDEFSVVSYEL
QYAIFTSQSNVVSLCNSVDSWMIVPNIKQNHYTVHGLQCGTKYIVIVKAINQAGNRSSDP
GKLKTNSQPFKLDPKSAHRKLKVSHDNLTVERDETSSKKSHSQDRFSTQSSYGVTGNVYI
DSGRHYWEALIGGSTWFAVGIAYKSAPKHEWVGKNSASWVVARCNNSWAVRHNSKEVPVE
PSPHLRRLGVLLDYDSGSLSFYDAVASQHLHTFEIAFAQPVCPVFNVWNRCLTILSGLPI
PDFIEGTDYNH
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaaacactggagtcggagctgacctgcccaatctgcctggagctctttgaggacccg
ctgctcttgccctgtgctcacagcctttgttttaactgtgcccatcgcatcctggtctcc
cactgcacccccagcgagcctatccagtccatcagcgccttccagtgcccgacctgccgc
tatgccatcaccctcaaccagaggggtctagagggactcaaacgcaacgtgaccctgcag
aacatcatcgaccgctaccagaaagcctctctgagcggacctaactctcccagcgagtgc
cggcgcgagcgagcgaccgtccccgacagcagcaaagccatgacatctccctccgaccgg
gtgcagtgtcagttctgcgagcaggacccgccgcagaacgcggtgaagacgtgcgtcacc
tgcgaggtgtcgtactgcgaggagtgcctcaaagccactcatccgaacaagaagcctttc
acaggccaccggctgatcgagcccctgctggactcccacctgcgagggctcatgtgtctg
gagcacgacgacgagaaggtcaacatgtactgcgtgacggatgaacagttgatctgtgct
ctctgtaagctggtcggccggcatcgagaccaccaagtcgcggcgctcagcgaccgatac
gacaaactcaagcaagccctggataccaacctcagtaatctaatgaagaggaccagtgag
ttggaaagcttgatgggtaaacttatccagacctgccaacatgtggaggtaaatgcatca
cggcaggaaaacaagctgctggaagagtgtgacgtgctgattaacatcgtacagcagcga
agacaaatcatcggcaccaagataaaggaggggaaggccgtgaggctgaggaagctagca
caacagatagccggctgtaagcagtgcatcgagaggtcttcctccctcatcacccaggct
gaccacaccctcaaggaaaccgaccacgctcgcttccttcagacggctaaaaatatctgt
gagagagtctccatggcaacagcatcctcccaggtcctattaccagaaataaacctgaac
gacacctttgatacttttgccttggacttcacgagggagaagaaaatgctggagagcttg
gattacctcacagccccaaatccgccagtaatccgcgaggagctgtgtacagcctcgtat
gacacaatcacggttcactggacttcagatgatgaattctctgttgtgtcatacgagctt
cagtacgccatcttcacaagccagtctaatgttgtcagtctgtgtaactctgtggacagc
tggatgattgttcccaacatcaagcaaaaccactacactgttcacggactccagtgtggc
accaagtacattgtcatcgtcaaggccataaaccaggcgggaaaccgcagcagtgaccca
gggaaactcaagaccaacagtcaaccatttaagttggacccaaagtccgcccaccggaag
ctgaaggtgtcccatgacaacctgacggtggagagggatgagacgtcgtccaagaagagc
cacagtcaagaccgcttctccactcagagcagctatggcgtgacgggaaacgtctacatc
gacagcggacggcattactgggaggctctgataggaggcagcacatggtttgctgtaggg
attgcttacaagtcggcgccaaaacacgagtgggtcgggaaaaactccgcctcgtgggtg
gtggcccgttgcaacaactcgtgggcggtgcgccacaacagcaaggaggttcccgtcgag
ccttcaccgcacctgcgacgcctcggggtgttgttggactacgactctggatctctgtcc
ttctacgatgccgttgcctctcagcacttgcacacctttgaaatcgccttcgctcagcca
gtctgccctgttttcaatgtgtggaatcgatgtttgacaatcctcagtggactccccatc
cctgatttcatagaggggacggactataaccactga
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