Cololabis saira (Pacific saury): 133445972
Help
Entry
133445972 CDS
T09849
Symbol
ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04622
RIG-I-like receptor signaling pathway
csai05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
133445972 (ifih1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
133445972 (ifih1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
csai04054
]
133445972 (ifih1)
Enzymes [BR:
csai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133445972 (ifih1)
Pattern recognition receptors [BR:
csai04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
133445972 (ifih1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C-RD
RIG-I_C
DEAD
Helicase_C
ResIII
CARD
SWI2_SNF2
C1_4
AAA_22
Drf_FH3
Motif
Other DBs
NCBI-GeneID:
133445972
NCBI-ProteinID:
XP_061579566
LinkDB
All DBs
Position
6:20324285..20347560
Genome browser
AA seq
990 aa
AA seq
DB search
MACEADEVNERLIEALRHRLVDKIKVEQVLDYIDFLQPAQKEQIRQKARAEGNISAAHAL
LTAVVRARPHGDGWFQGLVDALCHGGSAGAADYLQLTRPGPEQEAEHDNCVRLIHLLAPT
LADMNTEQVCVQCVSKELLTDEDKEIVLSETRNKGPRSGARELLNRIVRGQTTWFSDFLQ
VLLETEHTILYRELTGKSESESDEKLIPMDIEPAGSESAAAEICESPESMVISVAEEPQD
ESADLYASADPSPSEGPSQPDGNDLAAAAAAAAAAAEAARGTENSEIVLRDYQMEVVTPA
LEGKNIIICLPTGRGKTRAAVYVTKKHLDGRRAEGKSGKVVVLVNKVPLVEQHYTKEFLP
FLKHAYKVERVTGCSPLKISFAQIVRKNDIIICTAQILENFLDMANSGEDEGVNLSDLTL
IVIDECHHTQKDGVYKHIMMRYLTRKFKNKRHHKLQKKTEPLPQILGLTASPGVGGATKL
DKAVEHILRICANLDASKIMTSLGDFKKEQRKSILPAEDRKQDPFGDVIKRIMNAIHEHA
QLSVTCDLGSQNYEQWAVHKERQAAKEGDQTVRVCADYLRRYNDGLLLSNTIRMYDSLSC
LTKYHDEQLKKKATPDEEEKINITDTERFLFNLFKDNKDELERLAKNPEFENDSLSKLRT
KILQEFSSRDKARGIIFTKTRHSAIMLDQWIKENPKFADISVKSAHLIGGGDQSDVKPMT
SAEQKDVLKKFSTGEVNLLVATTVAEEGLDIPACNFVIRYGHVTNEIAMIQSQGRGRADD
STYTVVDVKNSGVAEKEVVNEFREDMMNKAINKIKALKQADYDEQINTFQMQAIMEKKMG
EKKQNKKTIRNESPSAVKFSCRNCRKHVCTGEDIHIIENMHRVNVTKEFSKLFNQRENTS
LQERLLDYETNGIIACKECGQNWGSMMTYRGIECPCLLVKNFVMDISGKRISNCTKWSEL
PINFPAFDYIEHATQMADSSDEEETESMNE
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggcctgtgaagccgacgaagtgaacgagcgcctcattgaagcgctcagacacaggctg
gtggacaagataaaagtggagcaggttctggactacatagactttctgcagcccgcacag
aaggagcagatcaggcagaaagcgagggccgaggggaacatatctgctgcccacgccctg
ctcacggccgtggtgagggccagaccccacggagacggctggttccagggcctggtggac
gcgctctgccacggggggagtgccggggcggccgactacctgcagctgacccggcccggg
cctgagcaggaggctgaacatgacaactgcgtccgactcatccacttactggctcccact
ctggccgacatgaacactgaacaagtgtgtgtccagtgtgtctctaaagagctgctcact
gatgaagacaaggagattgtgttgagtgaaacacgaaacaaagggcccaggagtggtgcc
agggagcttctcaacaggattgtgagaggtcaaacaacctggttttcagactttctccaa
gttctgcttgaaactgaacacacaatcctgtatcgtgagctgactggaaaatcagaatca
gaatcagatgagaaactgattccgatggacatcgaacctgcaggaagtgaatctgcagca
gctgaaatctgtgagagcccggagtctatggtgatcagcgtagccgaggagcctcaggat
gaatctgcagatctgtatgcgagtgctgatccgtcacccagcgaggggccctcacagcca
gatggaaatgacttagcagcagcagcagcagcagcagcagcagcagcagaagcagccaga
ggcacagaaaactctgaaattgttctccgagattatcagatggaagtcgtcacaccggcc
ttggaggggaaaaacatcatcatatgcctccccacgggaaggggtaaaaccagagccgct
gtctacgttaccaaaaaacatctggacggcaggagggcggagggaaagtcagggaaggtg
gttgtcctggtgaacaaggttcctctcgtggagcagcactacaccaaagagttcctgccc
tttctgaagcacgcatataaagtggagagagtcacaggatgcagcccgctcaaaatctcc
ttcgcccagatcgtgcggaaaaatgacatcatcatttgcacggcccagattttggaaaac
ttcttggatatggccaacagcggggaggatgaaggagtgaacttgagcgatctgaccttg
attgtaatagatgagtgtcaccacactcagaaagatggagtctacaaacacataatgatg
cgctacctgacacggaagttcaaaaacaagcggcaccacaagctgcagaagaaaacggag
cccctcccgcagatcctcggcctgactgcctcgccaggcgttgggggagccacaaaacta
gacaaggctgtggagcacatactgcgaatttgtgcaaacctggacgcttccaaaatcatg
acaagtcttggggacttcaaaaaagagcaaaggaaatcaattctccccgctgaagacagg
aaacaggatccctttggcgatgtcatcaagcgcatcatgaatgccattcatgagcacgcc
cagctgagcgtcacctgtgacctgggctctcagaactatgaacagtgggcggtgcacaaa
gaacgacaggctgcaaaagagggagatcagactgtgcgggtttgtgccgactacctccgc
cggtacaacgatggcctgcttctcagcaacaccattcgcatgtacgattccctcagttgt
ctgacaaaataccacgacgaacaactcaagaagaaagcaacccctgacgaggaggagaag
ataaatataacagatacggagagattccttttcaatttgtttaaagacaacaaggatgag
ctggagagacttgcaaagaatccagagtttgagaacgacagcctgtcaaagctgaggact
aagattctgcaggagttcagcagtagggataaggccagagggatcatttttaccaaaaca
cgtcacagcgccatcatgctcgatcagtggattaaggaaaaccccaagtttgctgacatt
tcagtgaaatctgcacatttgattggaggaggcgaccagagcgatgttaaaccaatgact
tctgcggagcaaaaggatgtcttgaaaaagttcagcactggtgaagtgaacttgctggtt
gctacgactgtggcagaggaaggcctggacatacctgcctgcaatttcgtgatccgttac
ggacatgtcacaaatgagattgctatgattcagtctcaaggccgagggagagctgatgac
agcacttacaccgtggttgatgtcaagaactctggagtagctgaaaaggaggttgtcaat
gagttccgggaagacatgatgaacaaagccattaataaaatcaaagctttgaaacaagcg
gactatgacgaacagattaatacgtttcagatgcaggctataatggagaagaagatgggg
gagaagaagcagaataagaaaaccataaggaatgagagcccatctgccgttaagttcagc
tgcagaaattgccgcaagcacgtctgcaccggcgaggacatccacatcatcgagaacatg
cacagagtcaacgtcaccaaagagtttagtaaacttttcaatcagagagagaacacttct
cttcaggaacgcctcctggattacgagaccaatggcatcatagcctgcaaagagtgcggg
cagaactggggttcaatgatgacgtaccgtgggattgaatgtccttgcctccttgtgaaa
aactttgtgatggacatcagtggaaagaggattagcaattgcactaagtggagtgaactc
cccatcaacttcccggcctttgactacattgagcacgccacccagatggcggacagttca
gatgaagaagaaacagaatcaatgaatgaatga
DBGET
integrated database retrieval system
