| Entry |
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| Symbol |
prpf40a
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| Name |
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
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| KO |
| K12821 | pre-mRNA-processing factor 40 |
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| Organism |
csai Cololabis saira (Pacific saury)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:csai00001]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133445992 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:csai03041]
133445992 (prpf40a)
Spliceosome [BR:csai03041]
Complex A
U1 snRNP components
U1 related factors
133445992 (prpf40a)
Complex B
133445992 (prpf40a)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
6:21331097..21347357
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| AA seq |
867 aa
MMGPPGIPPHFPPMGMPPMGQRPPSMTPLPPGIIPPGIMPPMAAPPMGQMPGMMPPMIPG
MMIPPRIPAANVQPTGPPGVDSAAPAPGTSTTTNGSPQEEQTKKKSLWTEHKSLDGKTYY
YNTETKQSTWEKPDELKSPAEQMLSKCPWKEYKSDTGKPYYYNSQTKESRWTKPKELEDL
EALIKAEENGTTALLSWFDSRTAETAAPGTTAAPVVQVDNTATMVTVLEAETAAAVSEEH
QSQATVHQTAEVKTEDAPAVSTESSVVTESAPSVKVIKEELPEIQKKTYKWNTKEEAKQA
FKELLKEKGVSSNSSWEQAMKLIINDPRYSALPKLSEKKQAFNAYKVQTEKEEKEEARIK
YKESKETFQRFLENHDKMTSTTRYKKAEQMFSELEVWSCVPERDRLEIYEDVLFYLAKKE
KEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAEDEELQNMDKEDALI
CFEEHIRALEKEEEEEKQKTLLRERRRQRKNRESFQKFLDELHDHGQLHSMSSWMEMYPT
LSSDMRFANMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDILKDKGFLVEVNTTFDDF
GSVISSDKRATTLDTGNIKLAFNSVRLFLLEKAEAREREREKEEARKMKRKEAAFKNMLK
QATPPLEPESTWEGVRDRFLKEAAFEDVTLESERKRIFKDFIHVLEHECQHHHSKTKKHS
KKSKKHHRKRSRSRSGSESEDDEYHKKKKRSQSKSPSDRSTSGESERSYKKSKKHKKKGK
KRRHKSASPDSDNEKKGRERDGRREKDAEKDKENDKSRGKSRSDSKQKSPKRKSAKEEGG
WDTSGSELSEGELEKRRRTLLEQLDAP |
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| NT seq |
2604 nt +upstreamnt +downstreamnt
atgatgggaccaccgggaataccgcctcactttcctcccatgggaatgcctcctatggga
cagcgacctcccagcatgactccgttgccacctggtataattcctccaggcatcatgccg
ccaatggcggcaccaccaatgggacagatgcctggtatgatgccacccatgataccaggg
atgatgataccccctcgcatccccgctgcaaatgtacaaccaacaggaccgcctggtgtt
gactcagcagcacctgcccctggaacatctactactacaaatggatctccacaagaagaa
cagacaaagaagaagtccttgtggacagaacacaaatcactggatgggaagacctattat
tacaacacggagaccaagcagtccacatgggagaaaccagatgaactcaagtctcctgca
gagcaaatgctgtctaaatgcccctggaaggaatacaagtcagacactgggaagccttat
tattacaactctcagacgaaggagtctagatggaccaaacccaaagagctggaggatctg
gaagctctgatcaaagcagaggagaatggaaccacggctttattgtcatggtttgattcc
agaacggcagagacagcagccccagggactactgcagctcctgtggtgcaagtagataat
acagctactatggtgacagtattggaggcggagacagcggcagcggtctcagaggaacac
cagtcccaggcgactgtgcatcagacagctgaggtcaagacagaggatgcacctgcggtt
tccaccgagagctcagttgtcacagagagcgcacccagtgtgaaagtcataaaggaagag
ctgcctgagattcagaagaaaacgtacaaatggaacacaaaagaggaggctaagcaggcg
ttcaaggagctgctgaaggagaagggtgtgtcatccaactcctcctgggagcaggccatg
aaattgatcatcaatgatcctcgctacagtgcacttcctaaactgagtgaaaagaaacag
gccttcaacgcctacaaagtccaaaccgagaaagaagagaaggaggaggccaggatcaaa
tacaaggagtccaaagagacgtttcagagattcctggagaaccacgacaagatgacgtcc
accaccagatacaagaaagccgagcagatgttcagtgaacttgaggtgtggagttgtgtt
cctgaaagagacagactggagatctatgaagatgttttgttctaccttgctaaaaaagag
aaggaacaagccaagcagctgagaaagagaaactgggaggcgctgaaaaacattctggac
aacatggccaacgtcacgtaccgcaccacctggtccgaggctcagcagtacctgcttgac
aaccctacctttgcagaggacgaggagctgcagaatatggacaaagaggatgccctcatt
tgtttcgaagagcacatacgtgcactggaaaaagaggaggaagaggagaaacagaagact
cttctcagggagagaagacggcagcgcaagaacagagagtccttccagaaatttctggat
gagctccacgaccacggccagcttcactccatgtcttcctggatggagatgtacccgacc
ctgagctcagacatgcgcttcgccaacatgctgggccagcctggttctactcctttggac
ctttttaaattctatgtggaggacttgaaagcccgttaccatgacgaaaaacgaataatc
aaagatattttgaaggacaaaggatttctggtggaggtgaacaccacctttgatgacttc
gggtcggtcatcagctcagacaagagagccaccacgctggacacgggaaatataaagctg
gctttcaacagcgtaagactctttttactggagaaggctgaagccagagagagggagcga
gagaaggaggaagcccgcaagatgaagagaaaagaagcggcgttcaagaacatgctgaag
caggccacgccgccgctggagccggagtctacgtgggagggcgtcagagacagattctta
aaggaagctgcctttgaagatgtgactctggagtcggagaggaagagaatattcaaagat
ttcatacatgtcctggagcacgaatgccaacatcaccattctaagacgaagaagcactcc
aagaagtccaagaagcaccacaggaaacgatcccgctctcgatcaggctccgagtctgaa
gatgatgagtaccacaagaagaagaagaggtcgcagtccaaatctccctcagaccgctca
actagtggagagtccgagagaagctataagaagtccaagaagcacaagaagaaaggcaag
aaacggcgccacaagtctgcatcgccagactctgataatgagaagaaaggccgagagcgt
gatgggaggcgcgaaaaggatgcggagaaggacaaagagaacgacaaatctcgagggaaa
tctcgctcagactctaaacagaaatctcctaaaaggaaatcggccaaagaggagggcggc
tgggatacatcaggcagcgagctgagcgaaggagagctggagaaaagaagaagaacttta
ctggagcagctggatgcaccttga |
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