Cololabis saira (Pacific saury): 133446149
Help
Entry
133446149 CDS
T09849
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133446149 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133446149 (patl1)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133446149 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
133446149 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
133446149
NCBI-ProteinID:
XP_061579987
LinkDB
All DBs
Position
1
Genome browser
AA seq
806 aa
AA seq
DB search
MFRFQSLDDDCTLEEEDEGLKEEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAELDCLGAG
LVGEAEHTSAHLPPSAGRLPVPSALGFSSSSPGLPPQDADDRAGGGGLAESLARFILDAD
PAIAGVGAAERPSPGSTGSGLSALHGLDQSRVLDQSRVLPQPASIPHPPHPQQLPPGPSA
SGLPSLSMINFQQQHLLRAGPAPISKMNSHSIWENNMGFGPVSVTPGLLTHMEDSPLMSI
IKEVGLPKRPPQGRNDEGRDLSERVPPPRSSSPVIGSPPVRAVPIGTPPKQPMTHALNHQ
IHHPTAVHVRAPVQHRYPTPFPERLSPNTLLNIANSPLCRGPFPPRVGPVLSQIQRAQLL
NSQVAGFPRGGPAPPMLPGGFRPFFGGPPPPHGHRMGPLPHGPPVHGAPIRHNTTHLHPQ
HRRMLTQRMQSRGGDRVRAGGDRRSRDPYSNLMTQKEKEWVTKIQMMQLQSTDPYLDDYY
YQNYYEKMERRQDKERDSSSKKEHTTKLITPQVAKVEHTYRPVQFAGSLGKLTVSSVNNP
RKMIDAVVTTRSDDEENREKQVWNKRRQILYTVEKMYSLLLEVQDFEKRFVQTPEEDRET
LLEQHKTNTEQLCSSLQDKDWEDRVGDEQCVLIMSVRKGKRLIARLLPFLPPTQAAAVVT
AIARNLPALVKKDKQEQVLCCLVEPISAVIQALSSSALTDLLQELQGSEGQLAAVLQNKL
GVTLLYLILSEGERMQSSEPDCQLMDDNRWTELVFSVTRELLSIPPSSLCPPIFTPPNLL
SLFSRYVDRQRLELLQDKLQITDLSR
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtccctggatgacgactgtacgttggaggaggaggatgagggactg
aaagaggaggaagatgaaattgatcaattcaatgatgacaccttcggcgctggggccatc
gatgacgactggcaggaggagcacaagcgcctggccgagctcgactgtttaggagcgggg
ctggtgggagaagctgaacacacgtccgcccatctccctccctcggcgggccgcctcccc
gtcccgtctgctctcggcttctcctcatcatcgcctggacttcctccacaagatgcggac
gaccgagcaggaggaggtggcctggccgagtcgctggctcggttcatcctggatgccgac
ccagccatcgcgggagttggagcggctgagcggccctctcccggctccacagggtccggc
ctgtctgccctacacgggctggaccagtccagagtcctggaccagtccagagtcctgcca
cagcccgcctccatcccacaccctccccacccccagcagctgccccccggaccgtcagcc
tcaggacttccttctctgtccatgatcaacttccaacagcagcacctgctgcgcgcaggc
cccgcccccatcagcaagatgaattctcacagtatctgggagaacaacatgggctttggt
ccggtcagcgtgacgcctggactcctcacgcacatggaggacagtcctctgatgtccatc
atcaaagaggtgggtcttcctaaacggcctcctcaaggtcgaaacgatgaaggacgagac
ctttcggagagggtcccgcctccgcgctcctcttctcctgtgattggctcccccccggtc
agggcggtgcctattgggactccgcccaaacagccaatgacccacgccctgaatcatcag
atccaccatcccacggcggttcacgtgagagcgccggtccagcacagatatcccactcct
ttccctgagcgcctgtcacccaacaccctcctcaacatagctaactctcccctgtgtcgc
ggccccttccctcccagagttggtccagttctgtcgcagatccagcgagctcagctgctc
aactctcaggtggcaggttttccccgcggcggcccggcccctcctatgttgcctgggggc
ttcaggccgttcttcgggggacctcctcctccacacggccacaggatgggcccgctgcct
cacggcccccccgtgcacggggcccccatccgacacaacaccacgcacctgcacccgcag
caccgccgcatgctgacccagcgcatgcagagtcgaggaggggaccgcgtgagggcgggg
ggcgaccgacgcagccgggacccctacagtaacctgatgactcagaaggagaaggagtgg
gtcaccaagatccagatgatgcagctgcagagcaccgacccgtacctggacgactactac
taccagaattattatgaaaagatggagaggcgtcaggacaaggagcgcgacagcagcagt
aagaaggagcacacaaccaagctcatcacgcctcaggtggccaaggttgaacacacctac
agaccagtccagttcgcaggttctctggggaagctgacggtgtccagcgtcaacaacccc
cgcaagatgatcgacgccgtggtgacgactcgctcggacgacgaggagaacagggagaag
caggtgtggaacaagaggcggcagatcctctacacggtggagaagatgtacagcctgctc
ctggaggtccaagacttcgagaaacgcttcgtccagactcccgaggaggaccgcgagact
ctgctggagcagcacaagaccaacacggagcagctgtgcagctccctgcaggacaaggac
tgggaggacagggtcggcgatgagcagtgtgtgctgatcatgtctgtgaggaagggcaag
cggctcatcgctaggctcctcccattcctgcccccgacccaggccgctgctgttgtcacg
gcgatcgcccgcaacctccccgccttagtgaagaaggacaaacaggagcaggtcctctgc
tgcttagtggagccgatttctgccgtcattcaggcgttgtcgagctccgccctcacagac
ctgctgcaggagcttcaaggcagcgagggccagctggctgcagtcctgcaaaacaagttg
ggggtgacgctgctgtacctgatcctgagtgaaggtgagaggatgcagagctccgagccc
gactgccagctgatggacgacaaccgctggactgagttggtgttttcggtgacgagggag
ctgctcagcatccccccctcctccctctgtccccccatcttcacgcctcccaacctgctc
tcccttttctcacgttacgtggatcgccagaggttggagctgctgcaagacaagctacag
atcactgatttgtccaggtag
DBGET
integrated database retrieval system
