Cololabis saira (Pacific saury): 133446275
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Entry
133446275 CDS
T09849
Name
(RefSeq) collagen alpha-3(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04510
Focal adhesion
csai04512
ECM-receptor interaction
csai04518
Integrin signaling
csai04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133446275
04518 Integrin signaling
133446275
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133446275
09142 Cell motility
04820 Cytoskeleton in muscle cells
133446275
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
csai04147
]
133446275
00536 Glycosaminoglycan binding proteins [BR:
csai00536
]
133446275
Exosome [BR:
csai04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
133446275
Glycosaminoglycan binding proteins [BR:
csai00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133446275
Hyaluronan
Extracellular matrix or blood plasma proteins
133446275
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
Motif
Other DBs
NCBI-GeneID:
133446275
NCBI-ProteinID:
XP_061580269
LinkDB
All DBs
Position
6
Genome browser
AA seq
3014 aa
AA seq
DB search
MYFLVDSSRSIGEENFEHVRQFLYSLIQSLHQVGGQKFKFALVQYSSRPHTEFGLNTYSG
SQEALAHIKTMSYHGGGTRTGLGLEFLTRTHFTAASGSRAADGVSQVVVVLTDGRSQDDV
AEPAQMLHMAGVEMFAVGVQDAMDSELREMASQPYDTHVFNVDSFLQLGEIIQDLVVCLC
GAVAQSGGTMANEAPVPGGGTAQDSADLVFLIDGSENVGAANFPYVRDLVSRVIETLDVG
RDTIRVALALYSTDPEIKFYLNSYYSKSAVLEAVKGLTYQGGAESNLGAALEEVAESLLS
ETAGGRADEGVPQMLVIVSAGPSTDDAGADDQALKRSGVITFGVVIGDTATADLEEVATD
KSFILSAPDFRALESMGNLLRPYIDAVMQRNIIVHNEFTEVVTVGKRDIIFLVDSTMGTA
AIGALREFIKRFVSTMPIGPDGVQVGIAQFTTTPRLEMDLNSHGSREALVAALGAIRPRP
GTTINIGAALDFVRTNMLRADRGSRFQQNVPQLVLLLTSKKSTDSVVEPAMALQQMGVLT
LAAGSKSADVQELKQVAFADKVVFSKSDFRQLFRNPRDIVNALSTLAGVVVPEGPTESEV
EITTVQTQKVVRDIVFLVDGSNYVGGTNLPFVRDFMINVVNQLDVRPERVQIGLLQFADR
QRVEFYLNSYSNRQAIVDKISQLRLIGGSVVNTGAAMNYALATMFQPSAGSRKMQDVQQV
LVLITGGPSQDELKSVADKLALSGVLTFTVSAGQADEALLKTVAFVPDLAYHQTSFSNFP
ALAEVIMPKLTTVVGDTSYQVAVPVAGAERDVAFLIDGTDNVRADFPYIRDFILKVIEPL
DIGSDRVRVSVVQHSERPTPNFYLNTYKTKDEVIRAVSSMTLAGGRSLNTGSALRFMRST
ILSEGYGGRASQNVPQFLIVLAGDRSMDNVKEPAGQLKTEGVVPFGVGVKNADAKQIEAI
SHNPSFAFTVSEFSELSTIPQKLNNYVGLPKEQLQIVLQQAETQGPRKDIVFLVDGSDGV
GREFAIIQEFIRGVVTSLNVGENKIRIAVVQYGDSAQTDMYLNSHTTKEGILNGVRGMTQ
RGGRQRNLGQALQYLNEDVLTPARGSRKQEGVPQFVIVVSSGSSTDDVRRAATSLKKSQS
VLFSIGTRDVNPTEIREVSSGANFAFPVDDLPGLYTVQGNLLTRITELSDDDIVGLDGNR
VQDIVFLIDGTTAVRNEFPSIRAMMTRVVEKLNVGLDKVRVSVVQYSDEPKLEFLLNEFS
TKNEVLQAVSRLTNKGGNRLNTGRALEWVSTNIYKRSAGSRIEDGVPQILILVTGGKSSD
DVSRPADQLKKNLVAPVAVGSRNADVKELKQISLRSDLVYTVDNFQQLERVEQDMLDSVT
DISSDDIRNYVSDLGMLDLGRKDIIFLIDGSDSTGPAGIAHIRDFILSIVQQLEVQPDKV
RVAVVQYADGVKSEFSLNSHNNKPAVISAIKRLRQMGGRTSELATAMKYVLENELKASAG
VRLAEASQHLVVLTGKRSTQDVSLYGPLLKGARVNCIGIGAGSADTRQLAQVTTTSEDVL
LVPTFPNLPTIRQRFIERLTPLGDQFIPDYETPTEGLPPAKQADIVFLMDGSINLGRENF
NEVKEFIINLIDLFYTDRDDLRISLAHYATDVTDAFYLNTYTNRQDILNAIGRVEYKGGR
RINTGAAIRHVQDNHFIKAKGSRMDEGIAQILMVVTGGRSSDDSKTAALGLKNKGVRIFA
VGVGDIQEELENLASESSTVARASTFQELSELNEQILETLDDEVKGRLCVGVQETQRACN
VEVLVGFDVSAQNIFSSQTNLQNTMGTILRRISKMAPISCSGGQVPTVQVGMLALDSASE
PVQLDFTDNPEQLFDEFRKLRSRGPFVLNGRTISTYINRFKIRQDNTIKIIVHLTDGLDA
PYAEMKRRVEELRLSGVQGFILVGLERVQSFKEASLLEFGRGFRYTRPLALNIMDLDYEL
VEELDNIAERECCGVPCKCTGTRGDRGAVGQPGSKGGPGSAGSQGHPGDEGGPGERGPAG
INGTQGFQGCPGQRGVKGSRGYSGEKGEFGEIGLDGINGEEGKSGIAGSPGDRGSAGGRG
PKGAKGQAGDIGQKGISGDPGTSGPDNKIAGSKGDPGDAGPMGEAGQDGKQGGAGEAGRR
GADGRRGPPGQAGNAGRPGADGLQGEPGIAGSRGPPGPNGAPGSRGEDGNPGPRGPGGSP
GSAGDKGRRGPLGRKGEPGDPGPKGVVGPAGPRGEPGEDGRDGFGTAGPKGRKGDEGFPG
FPGPKGSAGDLGGRGGPGTRGNRGQRGVSGNIGTPGQKGEVGYPGPYGFKGPRGPGVNQC
DLVKKIRENCPCCFGKQECPLFPTELAFALDVSGDVDTAVFKNQRDTILQLVKDIAITES
NCPRGARVALTLYNSEVITEVRFADAMKKRALLEHIEGLQIPQTKKPRSLEMAMSFVAQN
TFKRVRSGFLLRKVAIFFVGNQVGRGQAITNAALRLHDAGISTLLLVNREDKGLSRAVQV
NNTALAQVIVLPPSGRSQYNSVLQKIMNCHVCLDICSPDQMCDYTPPSAGRDRRSFTSDV
DIDMAFVIDSSDSTYPTVFTEIKRYIAHMVEHLHVSSNPASSSNNARVSVIQQAPYQFVQ
NKTGPAIHVDIGLMEQTSAQDIVQLLLEKTPQLEGGRALTAAIESTVAQVFETSSLPRDR
KVLILFVTGSVEEEEEQLLQIATEVKCRGYFLVIFGVGHALSARDAHVLSAMASEPSDVF
FKRLNSISHFYDKHIQAFGQLLPKYISIENAFHMSPELSKKCKWFQSDEPQKNPFTSSQH
QEKYHRPQEVHQKKHNEAAGYKQVNQIISVRNATRLDTPQTVNELADPCSLDYDAGMPCT
DYQAKWFFDKKNGFCTQFWYGGCGGNENRFNTEDLCIKSCLRSAAAPQPEEQKAEPVEIL
TAPATEICQLPKEEGTCAKFVLKWYYEAATKSCTRFWYGGCDGNQNRFDSHEQCVQTCGT
AVPVNQETLTSIRT
NT seq
9045 nt
NT seq
+upstream
nt +downstream
nt
atgtactttctagtggattcatcccggagtattggagaggagaactttgaacatgtcaga
cagtttctttacagcctgatacaatccctacaccaggttggaggacagaagtttaagttt
gccctggtgcagtacagtagcaggccccacactgagtttgggctcaacacttattcagga
tcccaggaagccctggcacacatcaagactatgtcttatcacggtggggggacacgcact
ggcctgggcctggagttccttacgcgtacacatttcaccgctgcttctggcagtcgtgcc
gccgacggcgtgtcccaggtggtggtggtgctaacggacgggcgctctcaggatgacgtg
gcagagccagctcagatgctgcacatggcaggcgtggagatgtttgcagttggggttcag
gatgcaatggactccgaactcagggagatggctagccagccttacgacacgcatgtattc
aatgtagactctttcctgcagttgggggaaataattcaagatttagtagtgtgtctttgc
ggtgcagtggcccagtcaggggggactatggcaaatgaggccccagtgcctggaggaggg
acagcacaagattcagctgacctagtattcttaattgatggatctgagaacgttggagca
gcaaacttcccctatgtgcgtgatttggtttcgagagttattgagacccttgatgtgggc
agagacactattagggtggctttggccctgtacagcactgacccagagatcaaattctat
cttaatagctattacagcaaatcagcagtcttggaagctgtaaaaggcctgacctaccaa
gggggtgctgaatccaacctgggggctgccttggaggaagtggctgaaagccttttaagt
gaaacggctgggggcagggcagatgagggtgtgccccagatgttggtgattgtcagtgcc
ggtccatccactgatgatgcaggtgctgatgatcaggcccttaagaggtccggtgttatc
acatttggagtggtgattggtgacactgcaactgcagatctggaagaggttgccacagac
aaaagcttcatcctgtcagctcccgatttcagagcacttgaaagcatgggtaatctgctc
cgtccatacattgatgccgtgatgcagcgcaacattatagttcataatgagttcactgaa
gtggtgacagttggaaaacgagacataattttccttgtcgacagtacaatgggaacagcc
gccattggtgctttgcgtgaattcatcaagcggtttgtcagcacaatgcctattggtcca
gatggagttcaagtagggattgcccaatttactacaactcccagactggagatggatctc
aacagccatggaagtagagaagcattagttgctgctttgggtgctatccgaccacgacca
ggaacgactatcaatattggagcagccttggactttgtgcggacgaatatgctgcgggct
gacaggggcagtcgttttcagcagaatgtacctcaacttgtactgctgttaacaagtaag
aagtctactgacagtgtggtggaacctgctatggcactgcagcaaatgggtgtattgact
ctggctgccgggtccaaaagtgctgatgtccaggagctgaagcaagttgcctttgctgac
aaagttgttttctccaagagtgacttccggcaactgtttcgcaatccacgggatattgtc
aatgcactttcgactctcgctggggtggtagtgcctgaaggacccactgaatcagaggtg
gagataactacagtgcagacacagaaagtggtccgagacattgtcttccttgtggacggc
tcaaactacgtagggggtactaacctgccctttgtgagagacttcatgatcaacgtggtg
aaccagctagatgttcgtcctgagagggtccaaatcggtctcctacagtttgccgaccgg
caaagagtagaattttacctgaacagctacagcaacagacaagcaattgtggacaaaatc
tctcagctcaggttaattggaggctcagtggtgaacacaggagctgctatgaattacgcc
ctggccactatgttccagccttcagctgggtcacgcaagatgcaagatgtccagcaagtg
ttggtcctgatcactggtggcccatcccaagatgaactcaagtcggtggctgataaattg
gctttatctggtgttttgactttcacagtcagcgctggacaagcagatgaagcattactg
aagacagttgcctttgttccagatttagcttaccatcagacaagcttctcaaattttcca
gctttggctgaagtcatcatgccaaagctaacgacagtggttggcgataccagttaccag
gtagcagtgccagtcgcaggagctgaaagagatgttgctttcctcatcgatggaacagac
aatgttcgagcagattttccctacatccgagattttattctgaaagtgattgaaccactt
gacattgggagtgacagagtacgagtttcagtggttcagcacagtgagagaccaactcca
aatttctaccttaacacgtataaaacaaaagatgaggtgattagagctgttagttcaatg
acactggctggcggccgcagtttaaatacaggatcagctttgagattcatgaggagcacc
atcctatctgaaggctatggcggccgggcttctcaaaatgtcccacagtttctgattgtt
ttggctggagacagatccatggataatgtcaaagaaccagcaggtcaactgaagacagaa
ggagtagtaccatttggtgtgggtgttaagaatgcagatgcaaagcagatagaggccatt
tcacacaacccttcttttgccttcactgtgagcgaattcagtgaactgagtaccatacca
caaaagctcaataactatgtgggccttccaaaggaacagctgcagatcgtcctacagcaa
gcggaaacgcaggggccacggaaggacattgttttccttgttgatggatctgatggtgtt
ggacgagaatttgctatcatccaagagtttatccgtggggtggtgacgagtctcaatgtg
ggtgagaataaaatccggatagctgtggtccaatatggtgactctgctcagacggacatg
tatctgaattcacatacaacaaaagaaggcattttgaacggcgtcagagggatgacccag
cgaggaggaagacagcgtaacttgggacaggcattgcagtatctcaacgaggatgttctg
acaccagcaagggggagcagaaagcaagagggggtaccacagttcgtgattgttgtgtca
agtggctcctctacagatgatgtcaggcgtgctgccacctccctcaaaaaatcacaaagt
gtcctcttcagcatcggcaccagagatgtcaaccctacagaaatccgcgaagtgtcatct
ggggccaattttgccttccctgtagatgatcttcctgggttgtacaccgtccaaggaaac
ctgctcaccagaataacagagttgtcagatgatgacattgtaggattagatggaaacaga
gtgcaggatatcgtttttctcatagatggcacgacagcagtgcgtaatgagtttccatct
atccgtgccatgatgacaagagttgtggagaaactgaatgtaggactggataaagtcaga
gtttcagtggtgcagtacagtgatgaaccaaagttagaattccttctcaatgaattctcc
accaaaaacgaggtactccaggctgtgtcaagacttacaaacaaaggggggaatcgtcta
aatacaggccgtgctcttgagtgggtctctacaaacatctacaagaggtcggcaggaagc
cgcattgaggatggcgtgccacagattcttattctagttacagggggaaaatcttcagat
gatgtatccagaccagcggaccaacttaagaaaaatctggttgcccctgttgccgtgggt
tcaagaaatgcagatgtaaaagaactgaaacagatttccctgaggtcagaccttgtatat
actgttgacaacttccaacaacttgaaagagtggaacaagacatgcttgattcagtcaca
gacatttctagtgatgacatcagaaattatgttagtgatttaggcatgctggatcttgga
agaaaggacattatctttcttattgatggctcagacagtacaggtcctgctgggattgca
catatccgtgacttcatcctcagcattgtccagcaacttgaagtgcaacctgataaagta
cgcgtggctgtcgttcagtatgccgacggagtcaaatcagagttttcgctcaactcgcac
aacaacaagccggctgttatttctgctataaaaagacttcgtcagatgggtggacggaca
tcagaactggctacagccatgaagtacgtcttagagaatgagttaaaagcatcggccggt
gtccgactggctgaggcctcccagcatcttgtggttctcaccgggaaacgctccacccaa
gacgtctctctatatggacctctgctcaagggtgcccgggtcaactgtattggtattgga
gctggtagtgcggatacgaggcagctagcccaagttaccactacatcagaagatgttctt
ctggtcccaacatttcccaacctcccaacaatacgacaaaggttcattgagaggctgact
ccactgggagatcaatttatcccagattatgagactccaacggaaggcctgcctccagct
aaacaggctgatattgtgtttttaatggatggatccattaacttgggaagagaaaacttt
aatgaagtgaaggaattcatcattaacttaattgatcttttctatactgatagagacgat
ctacgaatttccctggcccattatgccacagatgtgactgatgctttttacttaaacact
tacaccaacaggcaagacattttaaatgccattggccgagtggagtacaaaggtggacgt
agaataaacactggtgcagccattcgccacgttcaagataatcattttataaaggcaaaa
ggcagtaggatggacgagggtattgcccagattcttatggttgtcactggaggacgctca
tctgatgacagcaagacggcagcccttggtttgaagaacaaaggtgtacggatctttgca
gtgggagtaggtgacattcaagaagaactggaaaatctagcaagtgaatcctccactgtg
gctcgagcaagtacctttcaggaactttcagaactcaatgagcagatcttggagactttg
gacgatgaagtcaaagggaggctgtgtgttggcgtacaagaaacacagcgagcgtgcaac
gttgaggtgttagtcggcttcgacgtgtctgcccagaacatcttcagctctcaaactaac
ctgcagaacactatggggaccattctacggaggatttccaaaatggcacctatcagttgc
tcgggcggccaggttcccactgttcaagtggggatgctcgcactggattctgcttctgag
cccgtccagctggacttcactgacaatcctgagcagctatttgatgaattcagaaagctg
cggagtcgtggtccctttgtcctaaatggtcggacaatttcaacttatatcaatagattc
aaaatccggcaagacaacactatcaagatcatcgttcatttgaccgatggtttagatgca
ccatatgctgaaatgaaaaggcgggttgaggagcttcgtctgtcaggagtgcaaggtttc
attctggttgggctggagagggtccaaagctttaaggaggcttcgttgttagagtttggc
cgtgggttcaggtacaccagacccttagcactcaacatcatggatttggactatgagctc
gtagaggaactggacaacattgcagaaagggagtgctgtggagtgccgtgcaaatgtacg
ggtaccaggggagacagaggagcagttggacagcccggctcgaagggtggtccaggatca
gcaggaagccagggacatcctggtgacgaggggggacctggggagagaggtcctgccggt
ataaatggaacacagggttttcagggatgccctggtcagagaggtgtgaagggctctcgc
ggctactcaggagaaaagggggaatttggagaaattgggctcgatggcatcaatggagaa
gagggtaaaagtgggattgcgggttccccaggcgatagaggaagcgcgggcggaagaggt
ccgaaaggtgccaaaggacaagcaggagacatcggacaaaaggggatcagcggagaccct
ggaacaagtggaccagataataagattgcaggatctaaaggagatcctggtgatgctgga
ccaatgggagaggctggtcaagatggaaaacaggggggtgctggtgaagcgggaagaagg
ggagctgatggcagaagaggcccacctggacaagctggaaatgcaggacggcccggagcc
gatggcctgcagggagagcccggtatcgcaggatccagaggtccacctgggcctaatggt
gcaccaggatccagaggagaagatgggaatcctggaccgaggggtcctggaggcagccca
ggctctgccggtgataagggtagaagaggacctcttggtcgaaagggagagcctggagat
ccaggtcctaaaggtgttgttggacccgcgggccctcgtggagagccaggtgaagacggt
agagatggctttggaactgcaggtccaaaaggaagaaagggagatgaaggtttcccagga
ttccctggacccaagggatcagccggggacctggggggccgtggtgggcctggaaccaga
ggaaaccgtgggcagaggggtgtctctggaaatattggcacaccgggacaaaagggagag
gttggatatcctgggccttatggtttcaaaggaccaagaggaccaggtgttaatcaatgt
gacctggtcaagaagatcagagaaaactgcccttgctgttttggtaagcaagaatgccca
cttttccccactgagctggcctttgccctggatgtttctggagacgtggacactgcagtc
ttcaaaaatcagcgtgacacaattctgcaattggtcaaagacattgccatcacagagagc
aactgtcctagaggagctcgtgttgctctgactctatacaacagtgaagtgatcactgag
gttaggtttgccgacgcaatgaagaaacgtgcgctgctagaacacattgaggggctgcag
atcccacagacgaaaaagccccgtagtctggaaatggccatgagctttgtggcccagaac
accttcaagagggtgcgcagtggtttccttttgaggaaggtagccatcttctttgttggt
aatcaagttggccggggacaagcaattacaaacgcagctctgcgcctccatgatgctggg
atttccacattgttgttggtcaaccgtgaagacaaaggactcagcagagcagtgcaggtc
aacaacacagcactcgcccaagtcattgttcttcctccctctggacgttcacagtacaat
tcagtcctccaaaagatcatgaactgccatgtctgcttagatatctgctctccagaccaa
atgtgtgactatacgcccccatcagctggtcgtgacaggagatcattcacctctgatgtg
gacatcgacatggcttttgtcatagacagctctgactcaacatacccaacggtttttact
gagattaaacgatacattgctcacatggtggaacaccttcatgtgtcttcgaatcctgca
tcatctagtaacaatgccagggtgtctgtaatccagcaagcaccataccagttcgtccaa
aacaaaacaggccctgctatccatgtggacattggtttgatggagcagacctcagctcaa
gacatagtccaattactgctggagaaaacaccgcagttagagggaggacgtgctctgaca
gccgcaattgaatccactgtggcgcaagtgtttgaaacatcctctcttccacgggacagg
aaggtactcattctgtttgtaacaggaagtgtggaggaagaagaggagcagctgctacaa
attgcgacagaggtcaagtgcagaggctacttcttggtaatctttggtgtaggccatgca
ctgagtgctcgggatgctcatgtcctatcagccatggccagcgagccttcagatgtcttt
ttcaaacgtctgaacagcatctcgcacttttatgacaaacacatccaggccttcggccag
ctgctgccaaagtacattagcattgaaaatgcattccacatgtcccctgaactgtcaaaa
aaatgcaagtggttccagagtgacgagccccagaaaaacccattcacatcttcacagcat
caggagaaatatcacagaccgcaagaagttcatcagaaaaagcataatgaagcagcaggg
tacaaacaagttaaccaaatcatcagtgtcagaaatgctacacgcctagacacaccacaa
actgttaacgaacttgccgacccgtgctcacttgactatgacgctggaatgccgtgcaca
gactatcaggctaagtggttctttgacaaaaagaacgggttctgtacacagttctggtat
ggaggttgtggagggaatgaaaatagattcaacactgaggacctctgcattaaaagctgc
ctgaggtcagcagccgcgccacagccagaggagcagaaggctgaaccggtggagattctt
acagctcctgccactgaaatttgccagctccctaaagaagaaggtacttgtgccaaattt
gtcctcaaatggtactacgaggccgccaccaagagctgtacacgcttctggtatggaggc
tgcgatggaaaccagaatcgctttgactcacatgagcagtgcgtgcagacttgtggaaca
gcagtaccggtcaaccaagaaacactcacttcaataagaacatag
DBGET
integrated database retrieval system
