Cololabis saira (Pacific saury): 133446559
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Entry
133446559 CDS
T09849
Symbol
trim13
Name
(RefSeq) tripartite motif-containing 13
KO
K12003
tripartite motif-containing protein 13 [EC:
2.3.2.27
]
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csai04131
]
133446559 (trim13)
04121 Ubiquitin system [BR:
csai04121
]
133446559 (trim13)
Enzymes [BR:
csai01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133446559 (trim13)
Membrane trafficking [BR:
csai04131
]
Autophagy
ER-phagy
Other ER-phagy associated proteins
133446559 (trim13)
Ubiquitin system [BR:
csai04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
133446559 (trim13)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-B_box
zf-C3HC4
zf-RING_UBOX
zf-RING_5
zf-RING_2
zf-C3HC4_4
zf-C3HC4_2
zf-C3HC4_3
RING_XB3-XBAT31
zf-Nse
TRIM_CC
Motif
Other DBs
NCBI-GeneID:
133446559
NCBI-ProteinID:
XP_061580593
LinkDB
All DBs
Position
6:41857407..41859694
Genome browser
AA seq
412 aa
AA seq
DB search
MMMEQLEEELTCPVCCSLFEDPRVLLCSHSFCKKCLEGLLEGSRGPAFRAPLKCPTCRKE
TPHNGANSLQINYSLRGIVEKFSKIKVMPKMSVCKQHCEQPLNIFCATDLKLICGFCATT
DEHTGHAFSSLEEAYGREKEAFEHLLHGVERWRSKETQSCLETLQGSKKKALQSVGKDAQ
KVEEYFDKLIGSLECKKSEILSDFETLKLVVMQAYDPEIARLSAALEEQRCALAMARSFR
SGSGTPASAGGSAADPLRFLQQMQEFREKLRFLQETPLPSRKDMDAGSLVRNFDVRKWDS
LRLRDVDRIAVPHEGGSYRTHAGPRTACFRRVTLYLLLLLLPGLIFLLPPCSLDAHLSIS
AVEPYLSGLLSHMETHLREITSLCNSLMDAGQECVTKLYDSAVHFITSPGVS
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgatgatggagcagctggaagaggagcttacgtgcccggtgtgctgcagtctcttcgag
gatccccgggtcctcctctgctctcacagtttctgcaagaaatgtttggagggacttctg
gaggggagcagaggtccggcgttccgggctcctctcaaatgccccacatgccgcaaagag
acgccgcacaacggcgcaaacagcctgcagatcaactactccctccgcgggatagtggag
aagttcagcaagataaaagtcatgcccaaaatgtccgtttgcaagcagcactgcgagcag
ccgctcaacattttctgcgccaccgatttgaaactaatttgcggattttgcgccacgacg
gatgagcacaccgggcacgcgttttcctccctggaggaggcgtacgggagggagaaggag
gcttttgagcatctgctgcacggggtggagagatggaggagcaaggagacgcaatcctgc
ctggagacgctgcagggcagcaagaaaaaggcgctgcagtcggtgggcaaggacgcgcaa
aaggtggaggagtatttcgacaaactcatcggttctctcgagtgcaaaaagagtgagatt
ctctccgacttcgagacgctgaagctggtggtgatgcaggcgtatgatccggagattgcg
cggctcagcgcggcgttggaggagcagagatgcgccctggccatggccaggtcgttccgg
agcggctctggaactcctgcatctgctggaggaagcgcagcggacccgctgcgcttcctc
cagcagatgcaggagttcagggagaagctcaggttcctgcaggagactcctctcccttcc
aggaaggacatggacgccggatccctggtgcgtaatttcgacgtgaggaagtgggactcg
ctgcgcctccgggacgtggacaggatcgcggtcccacacgagggggggtcctacagaacc
cacgcaggtccgaggaccgcatgtttccggagagtgactctttacctactgctgcttctt
cttccaggactcattttcctcctgcccccctgcagcctggacgcgcatctttccatctcc
gccgtggagccttatctctccggcctcctctcccacatggaaacgcacctgcgggaaatc
acctccctgtgcaacagtttgatggatgcaggtcaggaatgtgtcaccaagttatatgac
tcggctgtccactttattaccagtcctggggtgtcttaa
DBGET
integrated database retrieval system
