Cololabis saira (Pacific saury): 133446705
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Entry
133446705 CDS
T09849
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03020
RNA polymerase
csai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
133446705 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
133446705 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csai03021
]
133446705 (polr2b)
03400 DNA repair and recombination proteins [BR:
csai03400
]
133446705 (polr2b)
Enzymes [BR:
csai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
133446705 (polr2b)
Transcription machinery [BR:
csai03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
133446705 (polr2b)
DNA repair and recombination proteins [BR:
csai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
133446705 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
133446705
NCBI-ProteinID:
XP_061580679
LinkDB
All DBs
Position
7:477526..515742
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQEEDNQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDDLDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaccaggaggaagataatcaatacgatgaagacgaggatgagatcaccccggac
ctgtggcaggaggcctgctggatcgtcatcagctcttattttgacgagaaggggctggtc
cggcagcagctggattccttcgacgagttcatccagatgtcggtccagagaatcgtggaa
gacgctccgcccatcgacctgcaggccgaggcccagcacacgtcaggggaggtggaggag
ccgccccggtacctgctgaagtttgagcagatctacctgtccaagccgacccactgggag
agagacggagctccgtcccccatgatgcccaacgaggcccggctccggaacctcacgtac
tcggcccccctctacgtggacatcaccaagaccatcatcaaggagggggaggagcagctg
cagacgcagcaccagaaaaccttcatcgggaaaatccccatcatgctccgctccacctac
tgcctgctcagcggcctgacggacagagacctgtgtgagctgaacgagtgtccgctggac
ccggggggatacttcatcatcaacggctctgagaaggtgctaatagcccaggagaaaatg
gccaccaacacggtttacgtgtttgccaagaaggattccaaatacgcctacacggccgag
tgccggtcctgcctggagaactcgtcccgtccaaccagcaccatctgggtcagcatgatg
gcccgcggaggacagggcgtgaagaagagcgccatcggccagagaatcgtctccacgctg
ccctacatcagacaggaagttcccatcatcatcgtgttccgggcgctgggcttcgtgtcg
gacagagacatcctggaacacattatctacgactttgacgaccccgagatgatggagatg
gtgaagccgtccctggacgaggcgtttgtgatccaggagcagaacgtggctctgaacttc
atcggctccaggggagcgaagcccggcgtcaccaaagagaggagaatcaaatacgctaaa
gaagttctgcagaaggagatgctgccgcacgtcggagtcagcgacttctgcgagaccaag
aaggcttatttcctggggtacatggtccaccggctgctcctcgctgctctggggagacga
gagctggacgacagagatcactacggaaacaagaggctggacctggcggggccgctgctg
gccttcctgttcagagggatgttcaagaacctgctgaaggagatccgtatttacgcccag
aagttcatcgaccgagggaaagactttaatctggaactggccatcaagacccggatcatt
tctgacggactcaagtactcgctggccacgggaaactggggagacgtgaagaaggcccac
caggcccgcgccggggtgtcccaggtgctgaaccgtctcacctttgcgtccacgctgtct
cacctgcgtagagtcaactctcccatcggcagagacgggaagctggccaagccccgacag
ctgcacaacactctctgggggatggtgtgtcccgcagagacacctgagggtcatgccgtg
ggtctggtgaagaacctggccctcatggcctacatctccgtggggtcccagccgtccccc
atcctggagttcctggaggaatggagcatggagaacctggaggagatctcccccgccgcc
atcgcagacgccaccaagatcttcgtcaacggctgctgggtcggaatccacaaagatcct
gaacagctgatgaacacactgaggaaactccggagacagatggacatcatcgtgtctgag
gtctccatgatccgggacatccgtgagcgggagatccggatctacacggacgccggaaga
atctgccgaccgttattgatcgtggagaaacagaagctgctgctgaaacgaagacacatt
gatcagttgaaggaacgagaatacaacaattatagctggcaggacctggtagctagcggc
gtggtggagtacatcgacacgctggaggaggagacggtgatgctagcgatgaccccggac
gacctccaggaaaagggcgtggcctattgctccacctacacccactgtgagatccacccg
tccatgatcctgggagtctgcgcctccatcatccccttccccgatcacaaccagtccccc
aggaacacgtaccagtcggccatggggaaacaggccatgggcgtttacatcaccaacttc
cacgtgaggatggacacgctggcccacgtgctgtactacccccagaaacccctggtgacg
acccggtccatggagtacctgcgcttcagagagttacctgcagggatcaactccatcgtg
gccatcgcctcctacaccggttataaccaggaggattctgtcatcatgaaccggtctgcg
gtggaccgggggttcttcaggtctgtcttctatcgatcctacaaggagcaggaatccaag
aaaggcttcgaccaggaggagatttttgagaaaccgaccagagaaacctgccagggaatg
agacacgccatctacgataagctggacgacgacgggctgatcgccccgggcgtccgagtc
tccggggaggacgtgatcatcgggaagacggtgacgctgccggagaacgacgacgacctg
gactccaccaaccgccgctacaccaagagagactgcagcaccttcctgaggaccagcgag
accggcatcgtggaccaggtcatggtcacgctcaaccaggagggctacaagttctgcaag
atccgggtccgatccgtccggattcctcagatcggagataagtttgccagccgacacgga
cagaagggaacctgcgggatccagtaccggcaagaggacatgccgttcacctgtgagggc
atcacccctgacatcatcatcaaccctcacgccatcccgtccaggatgacggtcggacat
ttgatcgagtgtctgcagggaaaggtttctgccaacaagggtgagatcggcgacgccacg
ccgtttaacgacgccgtcaacgtgcagaaagtttctaacctgctgtcggagtacggatac
cacctgagaggaaatgaggttctgtacaacggcttcaccggcaggaaactgacgtcccag
atcttcatcggcccgacttattaccaacgactgaaacacatggtggacgacaagatccac
tcccgggcccggggcccggtccagatcctgaaccggcagcccatggagggccggtcccgc
gacggagggctccggttcggggagatggagcgtgattgtcagatcgctcacggagcagct
cagttcctgagggagcgactgttcgaggcctcggacccgtaccaggtgcacgtctgcaac
ctgtgtggcctgatggctatcgctaacacccggacacacacctacgagtgcaggggctgc
aggaacaagacacagatttctctggtcagaatgccgtacgcctgcaagcttctgttccag
gaactgatgtccatgagcatcgctcctcgtatgatgacgtcatag
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integrated database retrieval system
