Cololabis saira (Pacific saury): 133447114
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Entry
133447114 CDS
T09849
Symbol
nxf1a
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03008
Ribosome biogenesis in eukaryotes
csai03013
Nucleocytoplasmic transport
csai03015
mRNA surveillance pathway
csai05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133447114 (nxf1a)
03015 mRNA surveillance pathway
133447114 (nxf1a)
03008 Ribosome biogenesis in eukaryotes
133447114 (nxf1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
133447114 (nxf1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133447114 (nxf1a)
03009 Ribosome biogenesis [BR:
csai03009
]
133447114 (nxf1a)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
133447114 (nxf1a)
mRNA cycle factors
Stress granule specific factors
133447114 (nxf1a)
Ribosome biogenesis [BR:
csai03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
133447114 (nxf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
LRR_8
UBA_8
LRR_9
DUF3592
Motif
Other DBs
NCBI-GeneID:
133447114
NCBI-ProteinID:
XP_061581551
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All DBs
Position
7:complement(30607592..30620274)
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AA seq
636 aa
AA seq
DB search
MRREVTSTDFMVQGEHDDRTAPYRNRKGRGHKGRAFDRSRRDRQRGSHSGGFGGPGPRSR
LDEGDGDITMSDSSQDSNSQHRFNPYGKPFRKRDGRFDRDRQQGKGGGGGRGGGGNGGFR
GDRGGGGPKARSGWYKVTIPHGRKYDKKWLVTALQNICTVPYAPVQYHVDHNRVHFYVDD
SAAATALHKCSHKITDTDGYKVEVHVNPSDPPSFLQSDLKPEHLEHLKQCMAKRFDGSQQ
ALDLNNIRTDPDLVSQNIEVILNRKTNMEAVIKIIEENIPELTSLNLSNNRIHKLDELAE
LVTKVPNMKTLNLSHNELKSDRELDKLKGLKLGELWLNRNPLCDLFKDQAAYVSAVRQRF
PRILKLDGLDLPPPIGFDVETPTTIPPCKGSCFGSDEIKVLILRFIQQYYSIYDSGDRQP
LLDAYHDGASLSLTTPYSTQNPSRSSLGEYYKDSRNLKRIKDTTMRFRLLKHTRLNVVAF
LNELPKTQHDIASFTVDVNTYTNTLLSFTVSGVFKEVVVDGKSRESTMAFSRVFITVPAG
NSGLCIVNDQLFIRMATTEEIRRAFVAPAPTPSSSPVPTLTAPQQEMLTAFSVKSGMNLE
WSQKCLQDNEWDFNRAAQIFTQLKTEGKIPDAAFLK
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaggagagaagtcacatccacagatttcatggtccaaggagagcatgatgacagaact
gccccatatcgcaaccgcaaaggaagaggccacaagggtcgggcatttgacaggtcccgc
agagatcgtcagcggggaagccactcaggagggtttggaggtcctggaccccgctccaga
cttgacgagggagatggcgacataactatgagtgacagctctcaggacagtaactcccaa
cacagattcaacccatacggaaaaccgtttcgtaaaagagatgggcggtttgacagagac
agacaacaaggcaaaggaggtggtggtggtagaggaggtgggggcaacggtggcttcaga
ggagacagaggtgggggaggccccaaagcgcggtcaggctggtacaaagtcacgatacca
catggaagaaaatatgataagaaatggttagtgacggcactccagaacatctgtacagtt
ccttacgcacctgttcagtaccacgttgaccacaatagggtccatttctatgtggacgat
tctgctgctgccactgctttacacaaatgttcgcacaagattacagacacggatggttat
aaggtggaggtgcatgtcaacccaagtgatccaccatccttccttcaatctgacctaaag
ccagaacatttggaacacttgaagcaatgcatggcaaaacgttttgatggttcccaacaa
gcactggacttgaacaatattcgaacagacccagacctggtgtcccaaaacattgaagtt
atcttgaacaggaaaacaaacatggaggctgtcattaagataattgaagaaaacattcct
gagctgacaagtttgaacctgagtaacaaccgcattcacaaactggatgagctcgctgaa
ttggttaccaaagtgccgaatatgaagaccctcaatctatctcacaacgagttgaagtcg
gaccgggagctggacaaattgaaaggcctcaagctgggggagctgtggctaaaccggaac
cccctgtgtgacctctttaaggaccaggctgcatatgtcagtgctgtgcgacagaggttt
cccaggattctgaaactggatggtctggaccttcccccacccatcggatttgatgttgag
acgcccaccaccatccccccctgcaagggcagctgctttggctcagacgaaatcaaggtc
ctcatcctccggttcatacagcagtactacagtatatacgactcgggggacagacaacct
cttctggatgcttaccatgacggtgcatcgttatccctcacaacaccttactccacccag
aacccctcgaggagcagtttgggggagtattacaaagacagtcgaaacctgaagaggatc
aaagatacaacaatgcgctttcgactgctgaagcacacacgattgaatgtggtggctttc
ctcaacgagctgccaaaaacgcagcacgacattgcatcttttactgttgatgtaaacacc
tacacaaacacactactgtcatttacagtgagcggagtcttcaaagaagttgtcgttgat
gggaagtcacgagaatccacaatggccttctctcgtgtttttataacagttccggcagga
aattctggtttgtgcatcgtaaatgatcagcttttcatccggatggcaacaaccgaggag
atccgcagagcatttgtggctcctgccccgactccctcttccagtcccgtcccaacactc
actgcaccgcagcaagagatgctcacagccttctcagtgaagtcaggcatgaacctggaa
tggtcgcaaaagtgcttgcaagacaatgagtgggatttcaacagagcggcacagatcttc
acacagttaaagacagaagggaagatcccagatgcagccttcttaaaatga
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