KEGG   Cololabis saira (Pacific saury): 133447169
Entry
133447169         CDS       T09849                                 
Symbol
cul4b
Name
(RefSeq) cullin-4B isoform X1
  KO
K10609  cullin 4
Organism
csai  Cololabis saira (Pacific saury)
Pathway
csai03420  Nucleotide excision repair
csai04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:csai00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    133447169 (cul4b)
  09124 Replication and repair
   03420 Nucleotide excision repair
    133447169 (cul4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:csai04121]
    133447169 (cul4b)
   03400 DNA repair and recombination proteins [BR:csai03400]
    133447169 (cul4b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:csai04147]
    133447169 (cul4b)
Ubiquitin system [BR:csai04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     133447169 (cul4b)
DNA repair and recombination proteins [BR:csai03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      133447169 (cul4b)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      133447169 (cul4b)
Exosome [BR:csai04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   133447169 (cul4b)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 SecA_SW
Other DBs
NCBI-GeneID: 133447169
NCBI-ProteinID: XP_061581655
LinkDB
Position
7:32614918..32630913
AA seq 866 aa
MFPTGLSSPNPQPPPTQEVRPASTDVKNGSGNITSPKKRKINGSEREESSDTISSSPPKT
LTYSSPSSSSCSPTSLHIQKKLRFEDSVDLIGLGVKMAEEAAAAAASSCSNNKSKAMFLP
GGAGHHANGLSKSAASGTFSSSKPGAAKKLVIKNFREKPKLPENYTQETWQKLKEAVEAI
QNSTSIKYNLEELYQAVENLCSHKISAKLYKQLRAVCEDHIKAQIDQFREDALDSVLFLK
KIDKCWQDHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRFYIISDLKVQSKTI
DGILLLIERERNGEAIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQRLMQE
REVPEYLHHVNKRLEEEADRVITYLDQSTQKPLIATVEKQLLGEHLTATLQKGLTHLLDE
NRIQDLSLLYQLFSRVRGGVQVLLQHWIEYIKAFGSTIVINPEKDKTMVQELLDFKDKVD
HIIDVCFLKNEKFVNAMKEAFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELEKML
DKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEG
MFKDMELSKDIMIQFKQYMQCQNIPGNIELTVNILTMGYWPTYVPMEVHLPAEMVRLQEI
FKTFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFTLEEI
KLATGIEDSELRRTLQSLACGKARVLTKIPKSKDVEDGDKFSCNNDFKHKLFRIKINQIQ
MKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLMSEVYNQLKFPVKPADLK
KRIESLIDRDYMERDKENSNQYNYVA
NT seq 2601 nt   +upstreamnt  +downstreamnt
atgtttccaacaggtttatcttcccctaatccccaaccaccgccaacccaggaggttaga
cccgcgtccaccgatgtcaaaaacggcagtggtaacatcacatctccgaagaagaggaag
ataaacggctccgagagggaagaaagcagtgacacgatctcctcctcgcctcccaaaacc
ctcacttattcctccccgtcctcctcctcctgctctcccacctcgcttcacatccagaag
aagttgaggttcgaggactcggtggacttaattggactgggtgtgaaaatggctgaagag
gctgccgccgccgccgcttcttcgtgctccaataacaaaagcaaagccatgttcctgccc
ggcggcgcgggccaccacgccaacgggctgagcaagagcgcagcctccggcaccttctcc
agcagcaagcccggggccgccaagaaactagtcatcaagaacttcagagaaaagcccaag
ttgcctgagaactacacacaagaaacctggcagaagctgaaagaagcagtggaggccata
cagaacagcacttcaatcaagtacaatttagaggagctttaccaggctgttgaaaacctc
tgttcccataagatatctgccaagctttacaaacagctgagggctgtgtgtgaagaccac
atcaaggcacaaattgatcaattcagagaggatgccttggacagtgtgcttttcctgaag
aaaattgacaagtgctggcaagatcattgcagacaaatgatcatgattaggagtatattt
ttgtttttggatcgcacttatgttttacaaaattcaatgctgccatcaatctgggacatg
ggtctggagctgttcaggttctacatcatcagcgatctgaaggtccagagtaaaaccatt
gacgggattctgttgctcatcgagagggagagaaatggagaggccatagaccgcagtctc
ctgaggagcctgctgagcatgctgtctgaccttcaaatttatcaagactcttttgagcag
cgctttttggaggaaaccaatcgactgtatgctgcggagggacagaggctgatgcaggag
agagaggtaccagaatatctccaccatgtcaacaaacgcttagaggaggaggccgacaga
gtaatcacatatcttgaccagagcacacaaaaaccactcattgctactgtggaaaagcag
ttgctgggtgaacatcttactgcaactctccaaaaagggctgactcacctgctggatgag
aacaggattcaggatttgtctcttctctatcaactcttcagtcgagtgcgaggtggtgtt
caagtgctcctgcagcactggatagagtacattaaggcttttggaagcacaatcgtaatc
aacccagaaaaagacaaaacaatggtgcaagaattgctggacttcaaggataaagtggat
cacatcattgatgtgtgcttcctgaagaatgagaagtttgtcaacgccatgaaggaggcg
tttgaaacgttcatcaacaaacggccaaataaacccgcagaactcatagcaaaacatgtt
gattcaaagctgagagcaggaaacaaagaagcaacagatgaagaactggagaagatgctt
gataagatcatgattatctttagattcatctatggtaaagatgtgtttgaggccttttat
aaaaaggatctggcaaagaggttgctggtcggaaaaagtgcctcagtagatgcagaaaaa
tcgatgttgtcaaaactgaaacatgaatgtggagcagcattcaccagcaaactagaagga
atgttcaaggacatggagctttctaaagacatcatgattcagttcaaacagtatatgcag
tgccaaaacattcccggtaatattgagctgacggtgaacatcctcactatgggctactgg
ccaacctacgtccccatggaagtgcacctgcctgctgagatggtgcgactccaagagatc
tttaagactttctacctgggcaaacacagtggcaggaagctgcagtggcagtcaacacta
ggtcattgtgtcttaaaagctgaatttaaagagggcaagaaggagcttcaggtgtcactg
tttcaaacacttgtgttgttgatgtttaacgaaggagaagagttcaccctggaagaaatc
aaactggcaacaggaatagaggatagcgaactgcgccggacgctgcagtcgcttgcttgt
ggaaaagcacgcgtcctcaccaaaatcccaaaaagcaaagatgtggaggatggagacaag
ttttcttgcaataatgatttcaaacacaagctcttcaggatcaagattaaccagattcag
atgaaagaaacggtggaggaacaagcaagcacaacagaaagagtctttcaggaccgtcag
tatcaaatcgatgctgctattgtgcggatcatgaaaatgaggaagactctgagccataat
ctcttgatgtctgaggtttacaaccagctcaagttccctgttaagcctgctgacctaaag
aagaggatagagtctctcattgacagggactacatggagcgtgacaaggagaactccaac
caatacaactatgtggcctag

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