Cololabis saira (Pacific saury): 133447258
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Entry
133447258 CDS
T09849
Symbol
syvn1
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04120
Ubiquitin mediated proteolysis
csai04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
133447258 (syvn1)
04120 Ubiquitin mediated proteolysis
133447258 (syvn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csai04121
]
133447258 (syvn1)
Enzymes [BR:
csai01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133447258 (syvn1)
Ubiquitin system [BR:
csai04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133447258 (syvn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-RING_5
zf-ANAPC11
zf-RING-like
zf-Nse
FAM199X
FANCL_C
Motif
Other DBs
NCBI-GeneID:
133447258
NCBI-ProteinID:
XP_061581847
LinkDB
All DBs
Position
7:38999835..39012300
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AA seq
629 aa
AA seq
DB search
MVRAALVTVTSLALTGAVVAHAYFLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKF
MRKVFFGQLRAAEMEHLIERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
EDRVDFMERSPNISWVFHFRVLSLMGLLGIMDFLFVSHACHSIITRGASVQLVFGFEYAI
LLTMVLTIFIKYILHTIDLQSENPWDNKAVYMLYTELFTGFIKVLLYIAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEDLQASDNVCIICREEMVT
GAKKLPCNHIFHSSCLRSWFQRQQTCPTCRMDVLRASNNNQTQAAAQAPPPAPAAPANAP
AAPAPNVAPGMLPGFPPGLFPFWGPFPAVPPPGGAPAPGGADGPQGGTEATQAAGTSQPT
SSSADSTTSPAAAPGSAIPGFPFTFPPPPFPTAPWLPMPPPPPFVSSMPPPPPSLSRLSE
EELRELEAEGRRGLEARLQCLQNIHTLLDAAMLNIHHYLSTVTTLTAPQAAGSTEEVSGA
SASSAAAAASKTETDSSVSDQESKATVSSPPADSTSSTLDTEGEEKLDEREAEEGDDDGE
PNAAELRRRRLRKLETATSSSSSPPPPDN
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggtacgagcagccttggtgacggtcaccagtctggccctgactggggccgtggtggct
cacgcttactttctcaaacaccagttctaccccactgtggtctatctcaccaagagcagc
ccaagcatggcggtgttgtacattcaggcgtttgtactggtgtttctactggggaagttc
atgaggaaggtcttttttggtcagctaagggctgccgaaatggagcatctgattgagcgc
tcctggtatgcggtgacagagacgtgtttggctttcaccgtgttcagggatgacttttcc
cctcgcttcgtcgccctcttcaccctcctgctcttcctgaagtgcttccactggctggct
gaggaccgggtggactttatggagcggagtccaaacatatcctgggtttttcactttaga
gtattatctctcatgggtcttctaggcatcatggacttcttgtttgtcagccacgcttgt
cacagcatcatcacccgaggagcttcggtccaacttgtatttggatttgagtatgccatc
ctgctgaccatggtgctaaccatcttcatcaagtacatcctgcacaccattgacctgcag
agtgagaacccgtgggacaacaaggccgtgtatatgctctacaccgagctcttcacaggt
ttcatcaaagtgctgctgtacattgctttcatgaccatcatgatcaaggtccatacgttc
cccttgtttgccatccgccccatgtatttggccatgaggcagtttaagaaagccgtgacg
gatgcaataatgtcccggagagctatccgcaacatgaacacactgtaccctgatgcgact
ccagaggatttgcaggcttcagacaatgtttgcatcatctgtcgagaggaaatggttact
ggagccaagaaactaccgtgtaatcacattttccactcaagctgcctgcgctcctggttc
cagaggcagcagacctgccctacctgtcgcatggacgtcctcagggcatccaacaacaac
cagactcaggctgcagcccaagctccgcctcctgcccccgccgcccccgctaatgctccc
gcagccccggctcctaacgtggctccaggcatgttaccggggttccctccaggcctcttc
cctttctggggtccttttcccgcggtgcctccacctggaggagctccagcccccggtggc
gccgatggccctcaaggcggcacagaggccacgcaggcagctggcaccagtcagcccaca
tcctccagcgctgactctactacgtcacctgcagctgctccaggatcagcaatccccggc
ttccccttcacgtttcctcctcctcccttccccactgcaccatggctgcccatgcccccc
cctcctcccttcgtgtcatcgatgcctcctccccctccgtccctgtcccgcctgtcggag
gaggagctgagggagctggaggctgaaggccgccggggcctggaggcccgactccagtgt
ctccagaacatccacaccctgctggacgccgccatgctcaacatccaccactacctcagc
accgtcaccaccctcacagctcctcaggccgcgggcagcaccgaagaagtcagtggagcg
agtgcatcgtctgctgcagctgctgccagcaaaacggagacggactcgtccgtctctgat
caagagagcaaagccaccgtctcctctccccccgccgattccacgtcctccaccttggac
acagaaggagaggaaaagctggacgagagagaggcggaggagggcgacgacgacggagaa
cccaacgccgccgagctgaggcgccgccgtcttcgcaagctagagacggcgacgtcgtct
tcgtcctcgcctccccccccggacaactga
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