Cololabis saira (Pacific saury): 133447277
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Entry
133447277 CDS
T09849
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
133447277 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csai03021
]
133447277 (polr1a)
Enzymes [BR:
csai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
133447277 (polr1a)
Transcription machinery [BR:
csai03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
133447277 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
BUD22
Motif
Other DBs
NCBI-GeneID:
133447277
NCBI-ProteinID:
XP_061581886
LinkDB
All DBs
Position
7:40659818..40700988
Genome browser
AA seq
1688 aa
AA seq
DB search
MMFQKDVPWRRLEGMTFGIYSAAEIRKMSVKTITNFRFLDAVGNVAPNSLYDLSLGPADT
KEVCSTCCQDFIHCPGHLGHVELPLPVYNPLFFDKLYLLIRGTCLVCHTLTCPRAAIHLL
QKQLKLLDYGAMQEVYQIEQVLSQHLEENPKATGDEIEQVLREYTDTIVGEKAEASGTSK
PIKHLVEKKSSLINDFWTIHMKTRKCPHCGSGKSTVRREHNSKVIVTMPQRVQASGETGE
NLMAGKRVYLTASTAREHVINVWGKEGFFLKCLFPGLEPGSSTEGEKAFYPGLFFLELLV
VPPCRYRPINRLGDQMFTNGQTVNMQAVMKDCGVIRKLLALVAGTKVSEEEVQEDTDQAF
LSGIPGVTLTDKLYNVWILLQSHVNIVFDSDMDKLMSEKYPGIRQILEKKDGLFRKHMMG
KRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVHPGA
SMVIDEDGRKTILSPTNLAQREAVAKQLLTPSLGAQKMTMKIVNRHIKNGDVLLLNRQPT
LHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELSRAEAYTLVSTH
QQYLVPKDGKPLAGLIQDHMVSGTRITIRDCFFTREQYTELVYRGLTDKQGRVRLLAPAL
LKPQQLWTGKQVVSTLLLNLIPEKATPLNLIGKSKIPGKAWIQVHPRAAPRYKPDSMCDS
QVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYRGF
TLGVEDILVKPGANMQRTKIIKKSLKIGTKALRSAFNLPPNEALAEAQSTWQDAHLNPDQ
RDFIMSEHKFKEVANQVSNDINKVCMPVGLHTSFPDNNLQLMVQSGAKGSTVNTMQISCL
LGQIELEGRRPPLMPSGKFLPCFQPYDPSPGAGGFVSGRFLTGIKPQEFFFHCMAGREGL
VDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPR
QFSFIEENYEVIRKSQGLDSVLPRLDSQPAQHHFAAIQRWKTKREVAQPQRGPFLLFSQK
KFSKLKKSTQVTEPVSNTRDPVIEELIGKWRSLDEASRAKYTRKSSRCPEPALAVLRPDI
CFGSVSEKFHDITEKYLQDRTCLYQDNVDMDSLRQLLLYKWQRSLCDPGEAVGLLAAQSI
GEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMTIPVLNNKKALKRAK
MLRRKLAKVSLAEVLQKVNVVETLRTEKSQNLRAFKITFHFLPPERYNEDKLLTPRHILN
YMETRFFRLLLEAIKKRTAKLASIAVETRKATPRDTDNDGDGTPTATAELDDGEGGDKDE
PVVDDQGNEGDADASDAKRKGKQEEEVDYESEGEEAAEDKDVEDKEDLGEGESEEEGEAT
AEEESPEVRREEEEEAARKAAGQESHIQMRVNSVLQLNTAIERYSFDQQQELWCEVELTL
PVKKMHFDLTSVLSTLAHNAVVMETKGLTRCLLNESTTKSGEKEMVLNTEGINMHEIFKY
GDILDINRLYCNEVHAVAKTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFE
GVYKPLNRNAIRSNSSPLQQMTFETSYKFIKQATMLGSCDQLVSPSACLVVGKVVKGGTG
LFDLKQPL
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgatgtttcagaaggacgtgccatggcggcgcctggagggcatgacgtttggcatttac
tcagctgcagaaataaggaagatgagtgtgaagacgatcaccaacttccggttcctggat
gctgtggggaacgtggcccccaacagcctgtatgacctgtccctgggcccggccgacacc
aaggaggtttgttcaacctgctgccaggattttatccactgtcccggacacctcggtcat
gtagagttgcctctgcctgtgtacaatccgctgttttttgataaactgtacttgttgatc
cggggaacgtgcctggtgtgtcacacgctgacgtgtccccgagctgcaatacacctgctc
cagaagcagctgaagctgctggactatggagctatgcaggaggtctaccagattgaacaa
gttcttagccagcacctggaggagaatcccaaagccacaggggatgagattgaacaagtg
ctgagggaatatacggacaccatagtgggagaaaaggctgaggcttccgggacctccaaa
cctattaaacacctggttgaaaagaagagcagtctgataaatgacttttggaccatccac
atgaaaacaaggaagtgtcctcactgcgggagcggcaagtccacggtgcggcgggagcac
aacagtaaggtgatcgtcacgatgcctcagagagtgcaggccagcggggaaaccggggag
aatctgatggctggaaagagagtgtacctgacggccagcacggccagagaacatgtcatt
aatgtgtgggggaaagaaggtttcttcttgaagtgtctcttccctggactggagcccggt
agctccacggagggagagaaggctttctatcccggcctgttcttcctggagttgctggtg
gtgccgccctgcaggtatcgtcccatcaatcgactgggagaccagatgttcactaacggc
cagactgtcaacatgcaggccgtgatgaaggactgtggtgtcatcaggaagctgctggct
ctcgtagcaggaaccaaagtatcggaggaggaggttcaggaggacacagatcaagctttc
ctgtcggggatacccggggtgactttaactgataaactctacaacgtgtggatcttactg
cagagccacgttaacatcgtctttgacagtgacatggacaagctgatgtcagagaaatat
cctggaatcagacagatcctggaaaagaaggacggattgttccggaagcacatgatgggc
aaacgagtggactacgctgcccgatcagtcatctgtcccgacatgtacatcggaactaat
gaaataggaataccaatggtttttgccaccaagctgacgtaccctcagcccgtcacaccc
tggaacgtgaaggagctccgtcaggccgtgctgaacgggcccaacgtgcaccccggcgcc
tccatggtgatagacgaggacggcaggaaaaccatcctgtcacccaccaacctggcccag
agagaagccgttgctaagcaactgctgacgccctctctaggagcacagaagatgacaatg
aagatcgtaaaccgtcacataaagaatggagatgttttgttgctcaacaggcagcccacc
ctgcacagaccctccatacaggcccactgtgcacggatcttacctggggaaaaggtgctg
aggcttcattacgccaactgcaaggcctacaacgctgactttgatggagatgagatgaac
gctcacttcccccagagtgagctgagcagagccgaggcctacacgttagtcagcacgcac
cagcagtatctcgtccccaaggatggtaaacctctagcaggtctgatccaggaccacatg
gtgtcaggaaccaggatcaccatccgggactgcttcttcaccagagagcagtacaccgag
ctggtgtaccgaggactgacggacaagcagggccgggtccggctgctggccccggctctg
ctcaagccccagcagctgtggacgggcaagcaggttgtgtccacgctgctgctgaatcta
attccagagaaagcgacgcctctcaacctgattggaaaatccaaaatccccggcaaagcc
tggatccaggttcatcctcgagctgctcccagatacaaacccgacagcatgtgtgactcg
caggtggtgatccggcagggcgagctgttggtgggggttctggacaaagctcactacggc
tcgtcggcctacggcctggtccactgctgctacgagctgtacggaggggagaccagtggg
aagctgctcagctgcctggcccggctcttcaccgcctacctgcagctgtaccggggcttc
acgctgggtgtggaggatatcctggtgaaaccaggtgccaacatgcagaggaccaaaatc
attaaaaagtcactgaaaatcggcaccaaagccctgcggtcagcgttcaacctgccaccc
aacgaggctctggccgaggcccagagcacgtggcaggacgcccacctcaaccccgaccag
agagacttcatcatgtccgagcacaagttcaaagaggtggccaaccaagtcagcaatgat
atcaacaaggtgtgtatgcccgtgggacttcacacctccttcccagacaacaacctccaa
ctgatggtccaatcaggagccaagggatctacagtaaacaccatgcagatttcctgtctg
ctgggtcagattgagttggagggccggaggcctccactgatgccttctggtaaattcctg
ccctgtttccagccgtacgacccttcacccggcgctggggggtttgtttcggggaggttt
ctcacaggcatcaaaccacaggagtttttcttccactgcatggctggtagagaagggctg
gtggacacagctgtgaaaacgtctagatcaggatatctgcagagatgcatcataaagcat
ctggagggtttggtggtccagtacgacctgacggtgagagacagtgacgggtccgtggtt
cagtttctgtatggtgaagacgggctggacatccccaagacccaatttctgcagccaaga
cagttctccttcatagaggaaaactatgaggtcatcaggaagtcccagggtctggacagt
gtcctgccccggctggactcccagccagctcagcaccactttgcagccatccagcgctgg
aaaacaaagagagaggtagcacaacctcagagaggtccattcttgctgttttcccagaag
aagttttcaaaactaaaaaaaagcacacaagtaacagagcccgtctctaacaccagagat
cctgtaatagaagagctcattggaaagtggcgttctctggatgaagccagcagagccaag
tacacgaggaagtcgtcccgctgtccagagcccgcgctggccgtcttaagacccgacatc
tgcttcggttcagtgtcggagaagttccacgacatcacagaaaagtaccttcaggacaga
acctgtttatatcaagacaacgtggacatggacagcctgcggcagctgctgctctataag
tggcagcgctccctgtgtgatccaggggaggctgtgggactgctggcagcccagtccatc
ggggaaccgtccacccagatgaccctaaacaccttccattttgctggcagaggagagatg
aacgtcaccctgggaatacctcgactgagggagatcctgatggtagccagctccaacatc
aagacccctatgatgaccatcccggtgctcaacaacaagaaggctctgaagagagccaag
atgctgcggaggaaactggcaaaggtgtccctggctgaggtgctgcagaaagtgaatgta
gttgaaacgctgcggacagaaaaatcccagaatctgcgagcgttcaagattaccttccac
ttcctgcctcctgaacgttacaacgaggataagctgctaacgccccgtcacatcctcaac
tacatggaaaccaggtttttccgcctcctcctggaagccattaagaagcgcacggccaag
ctggcctccatcgccgtggagacgaggaaggccacgccccgggatacggacaacgatggg
gacgggactcccacggccacggcagagttagatgatggggaaggaggagataaagacgag
cctgttgttgatgatcaagggaatgaaggagacgctgatgcatcagatgccaagagaaaa
ggcaaacaggaggaggaggttgactatgaaagtgagggagaggaagcagccgaagataaa
gacgtggaagataaagaagatttgggggagggggagtctgaagaggagggtgaggcgact
gctgaagaggagtctccagaagtgagaagagaggaggaggaggaggcagcaaggaaagca
gcgggacaggagtcccacatccagatgagagtcaactcggttctgcagttaaacacggcc
atagagagatattcttttgatcagcagcaggaactctggtgtgaggtggaactgactctg
ccagtgaagaagatgcactttgacctgacctcagtcctgtcaacactggcccacaatgca
gtcgtcatggaaaccaaaggcctgacacggtgccttctgaacgagagcaccaccaagtct
ggagaaaaggagatggttctcaacacggagggcatcaacatgcatgaaatcttcaagtat
ggggatatcttggacatcaacagactgtactgcaacgaggttcacgccgtggccaagacg
tacgggattgaagtggctctgaaggtcattgagaaggagatcaaagatgtgtttgctgtc
tatggtatcgaggtcgaccccagacatctatcactggtagcagactacatgtgttttgaa
ggcgtatataagccactgaaccggaatgccatcaggtccaactcttctcctctgcagcag
atgacctttgagacgagctacaaattcatcaagcaagccaccatgttgggttcttgtgat
cagctggtgtctccttcagcctgcctcgtggtggggaaggtagtcaagggaggaacaggg
ttgtttgatctgaagcaaccgctgtaa
DBGET
integrated database retrieval system
