Cololabis saira (Pacific saury): 133448036
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Entry
133448036 CDS
T09849
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133448036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csai03041
]
133448036
03009 Ribosome biogenesis [BR:
csai03009
]
133448036
Enzymes [BR:
csai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133448036
Spliceosome [BR:
csai03041
]
Complex A
U1 snRNP components
U1 related factors
133448036
Complex B
133448036
Ribosome biogenesis [BR:
csai03009
]
Eukaryotic type
Pre-60S particles
Helicases
133448036
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
133448036
NCBI-ProteinID:
XP_061582507
LinkDB
All DBs
Position
1:complement(3007757..3027385)
Genome browser
AA seq
635 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPPRFGGGGGGGGNRGGPPPGKFGNPGERLRKRHWNLDELPKF
QKNFYQEHPEVTHRALQEVEQYRRSKEVTVKGRECPKPIVKFHEAAFPSYVMDVIAKQNW
TEPTPIQAQGWPVALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLA
PTRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC
GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL
KDYVQINIGALQLSANHNILQIVDVCNDMEKEDKLIRLLEEIMSEKENKTIIFVETKRRC
DELTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFVI
NYDYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQM
AEDRGGRGRGGRGGYKDDRRDRYSGGGRSNFGASGFRDRDGGDRGFGGPKPGFGGGGGKA
QNGGGFGGGGGGANSGGSYGNSSYNGNGQGNFGAPPGQGFGGQGFQGPPQFGGLPRGQNG
LNHPPFPFGSQPPPQNSPAPPPPMVPYPMPPSFPQ
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgccagggttttcagacagagatcgtggcagagatagagggtacggcgggggacctcct
cggttcggagggggaggcgggggaggagggaaccggggcggaccccccccggggaagttc
ggcaaccccggggagcggctgcggaagaggcactggaacctcgacgagctgcccaagttt
cagaagaacttctaccaggaacaccccgaagtcacacacagagctctgcaagaggtggaa
cagtaccggagaagcaaagaggtcacggtgaaaggccgggaatgccccaaacccatcgtc
aaattccacgaagctgcttttccaagctacgtcatggacgtcattgccaaacagaactgg
accgaacccactcccatccaggctcagggctggcccgtggccctgagcgggaaggacatg
gtgggcatcgctcagaccggctcagggaaaaccctggcgtacctgctgcctgcaatcgtg
cacatccagcaccagccgttcctggagcacggagacggacccatctgcctggtgctggcg
ccgacccgggagctggcccagcaggtgcagcaggtggcggccgagtacggccgagcctcc
cgtctcaagagcacctgcatctacggaggagcacccaagggcccgcagatcagggacctg
gagagaggcgttgagatctgcatcgccacgccgggtcgtctcatcgacttcctggagtgc
gggaaaaccaacctgcgtcgctgcacctacctggtgctggacgaggccgaccgcatgctg
gacatgggctttgagccgcaaatacgcaagatcgtggaccaaatccggccggaccgccag
accctgatgtggagcgccacctggcccaaagaggtgcggcagctggccgaggacttcctg
aaggactacgtccagatcaacatcggagcgctgcagctcagcgccaaccacaacatcctg
cagatcgtagacgtgtgcaacgacatggagaaggaggacaaactgattcgtctgctggag
gagatcatgagcgaaaaggagaacaagaccattatttttgtggagaccaaaagacggtgt
gatgaactcaccaggaggatgagaagagacgggtggcccgcgatgggaatccatggagac
aagagccagcaggagagggactgggtcctgaatgaattcagatatggcaaagctccgatt
ctcatcgcgacagacgtggcctcccgcggcttagatgtggaggatgtgaaatttgtcatc
aattatgactaccctaactcctccgaggattatatccaccgcattggacgcacagcccga
agtcaaaaaacgggcaccgcctacaccttcttcacccccaacaacatgaaacaagctagc
gacctgatctctgtgctccgcgaggccaatcaggccattaaccccaagctgatccagatg
gccgaggacagaggaggtcgtggtcgggggggaagaggcggctacaaggacgaccgccgg
gacaggtattctgggggcgggcggagtaacttcggcgctagtggcttcagggacagggac
ggcggcgatagagggttcggcgggcccaagcccggcttcgggggcggggggggcaaggcc
cagaacgggggcgggttcgggggcggcggcggcggcgctaactctggcggtagctacggc
aacagcagttacaacggcaacggacagggaaacttcggggccccgcccggccagggcttc
ggcggccagggcttccagggcccgccccagttcggcggcctgccgcggggccagaacggc
ctgaaccacccgcccttccccttcggctcccagccgccgccgcagaactcgccggcgccg
ccgccgcccatggtgccctaccccatgccgcccagcttcccgcagtaa
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