Cololabis saira (Pacific saury): 133448307
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Entry
133448307 CDS
T09849
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04510
Focal adhesion
csai04512
ECM-receptor interaction
csai04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133448307 (col2a1b)
04518 Integrin signaling
133448307 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133448307 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
csai00536
]
133448307 (col2a1b)
Glycosaminoglycan binding proteins [BR:
csai00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133448307 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
133448307
NCBI-ProteinID:
XP_061582691
LinkDB
All DBs
Position
8:9478610..9570167
Genome browser
AA seq
1489 aa
AA seq
DB search
MFTFMDSRTVLLLVASQLCLLVRCQLDADQDDTFSCTQDGQSYSDKDVWKPEPCRICVCD
TGTVLCDEIVCEELKDCPKPEIPFGECCPICAADQPPSIGIPGAKGQKGEPGDITDVVGP
RGSSGPMGPPGEQGPRGSRGEKGERGSSGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGGN
FAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGNPGEPGESGQSGP
MGPRGPSGPTGKPGDDGEAGKPGKGGDRGPPGPQGTRGFPGTPGLPGIKGHRGYPGLDGS
KGETGALGSKGESGAPGEAGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGP
VGPSGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIPGS
KGSSGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPVGL
QGPLGPQGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGSPGA
SGPKGAGGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGASGEDGRPGPPGPQGARGQ
PGVMGFPGPKGATGEGGKSGEKGLLGAPGLRGLPGKDGETGSAGPPGPAGPAGERGEQGQ
PGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGTTGPRGERGFPGERGPAGPQGLQGP
RGLPGTPGTDGPKGAIGPAGTGGAQGPPGLQGMPGERGAAGIPGPKGDRGDLGEKGPEGA
SGKDGARGLTGPIGPPGPGGPNGEKGESGPAGPSGAPGTRGTPGDRGEGGPPGPAGFAGP
PGSDGQPGAKGEMGESGQKGDAGAPGPQGPSGAPGPSGPTGVSGPKGARGAQGPPGATGF
PGAAGRVGPPGPNGNPGPSGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGAAGTPGEKGD
AGEDGPPGPPGPSGPQGLGGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAAGGPGDRGP
PGPVGPPGLTGPAGEPGREGTPGSDGPPGRDGSTGIKGDRGATGPLGAPGAPGAPGANGP
VGPTGKQGDRGEPGAQGPSGPSGPAGARGMPGPQGPRGDKGEGGENGERGQKGHRGFTGL
QGLPGPPGQAGDQGATGPSGPSGQRGPPGPVGPAGKDGSNGQTGPIGPPGPRGRGGDTGP
SGPPGNPGPPGPPGPPGPGIDMSAFAGLGQVEKSPDPLRYMRADQAAGNLRQHDAEVDAT
LKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVFCNME
TGESCVYPKPSSIPRKNWWFSRSKDRKHVWFGETMNGGFHFSYGDESLAPNTAAIQMTFL
RLLSTEAAQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMEDGC
TKHTGHWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDVGPVCYL
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgttcacgtttatggattccaggactgtactgctacttgtagcatcccaactttgtcta
ttagtgagatgtcaactggatgccgaccaggatgatacttttagctgtacacaagacggc
cagagttatagcgacaaggacgtatggaaacccgagccttgtcgcatctgtgtgtgtgac
actggaaccgtcctgtgtgatgaaattgtctgcgaggaactaaaagactgccccaaacct
gaaatcccattcggagagtgttgccccatctgcgctgctgaccagcctccatccattgga
atacctggagccaagggtcagaagggcgaaccaggtgatatcacagatgttgtaggacca
agaggatcgtctggcccgatggggccaccaggagagcaaggaccccgcggatcaagagga
gaaaaaggagaaaggggaagttctggtccccgtggcagagatggtgagcctggcacccct
ggaaaccccggcccccctggacccccaggaccaaacggaccccctggccttggcggaaac
tttgctgctcagatggcgggcggtttcgacgagaaggctggcggcgcgcagatgggcgtg
atgcaaggaccgatgggccctatgggaccccgaggaccacctggccccaccggatcaccc
ggaccacaaggtttccaaggcaacccaggagagcccggagagtcgggacagtccggtccc
atgggtccccgtggtccctctggacctacaggaaaaccaggagatgacggtgaggctgga
aaaccaggcaaaggtggtgaccgtggacctcccggacctcagggaacacgtggattccca
ggaacaccgggtctgcccggcatcaagggacacagaggttatccaggtctggatggttca
aagggagagaccggcgctctcggttctaagggtgaatctggcgctcccggagaagctggc
tcccctggacccatgggaccccgtggtttgcccggtgagagaggacgcccaggacccagc
ggagctgctggagcacgtggaaatgatggcttgcctggtcctgctggtcctcctggtcct
gttggtccgtctggagctccaggcttccctggctctcctggtgcaaagggagaagctgga
cctactggtgctcgcggacccgagggtgctcagggaccccgtggagagtctggcacgcct
ggatcaccgggaccctctggcgcttctggcaaccctggtactgacggtatccctggatct
aaaggctcatctggtgctcctggtatcgctggtgcccctggtttccctggacctcgtggg
cctccagggcctcagggagcaactggacctctcggaccaaagggaacatccggcgatccc
ggtattccaggattcaagggagaagctgggccaaaaggagaaattggaccagtgggtctt
caggggcccctaggccctcaaggagaagaaggcaagagaggacccaggggagagccgggt
gctgccggacccctgggacctcccggggagagaggagcccctggaaaccgcggtttccct
ggtcaagatggtctggctggtcccaagggagcccccggggagcgaggatcccctggagcc
agcggtcccaagggtgccggtggtgacccgggccgtcctggagagtctggtcttcctggt
gccaggggtctgactggtcgccccggtgacgccggacctcaaggcaaagttggaccctct
ggagcttcaggagaggacggtcgtccaggaccccccggccctcagggggcccgtggacag
cccggtgtcatgggattccccggacccaagggagcaactggtgaaggtggcaagtctggc
gagaaaggactgctgggagctcccggtctgagaggtctgcccggcaaagatggagagacc
ggttctgccggaccccctggcccagccggccctgctggggagagaggagagcaaggacag
cccggcccctcaggtttccagggtcttcctggaccccctggtcctcctggagagggaggc
aagcccggagaccagggagttccaggagaggctggagctgctggaaccaccggcccccga
ggagagcgtggtttcccgggggagcgaggacctgcaggtcctcagggtctgcagggacct
agaggtctgcctggaactccgggaaccgatggacccaagggagccattggaccagctggt
accggtggagctcaggggccgccgggcctgcaggggatgcctggagaaagaggagccgcc
ggcatccctggacccaaaggagacagaggtgaccttggagagaaaggacctgaaggagct
tcgggcaaagatggtgccaggggtctcaccggtcccattggtcctcccggtcccggtggt
cccaacggggaaaagggtgaatccggtcctgctggtccgtctggggctcccggcactcgc
ggcactcctggtgacaggggagagggcggacctcctggacctgctggtttcgctggacct
cctggttccgatggtcagcctggagccaagggagagatgggagaatctggacagaaggga
gacgctggtgcccctggacctcaaggaccatctggtgcacctgggccatcaggtccgacg
ggtgtttctggacccaaaggtgctcgtggtgctcagggacctcctggtgccactggtttc
cctggagccgctggccgagttggaccccccggccccaatggtaatcctggaccgtctggt
cccgccggccctcctggtaaagacggacccaagggcgtgagaggagacggtggtccccca
ggccggcagggcgacgccgggctccgcggtgctgctgggacccccggggagaagggagat
gctggagaggacggtcctcctggtcccccaggtccctccggtcctcaaggattgggtggt
cagcgtggtatcgtcggtctgcctggacagcgaggtgaaagaggtttccctggtcttccc
gggccttctggtgagcctggaaagcagggagccgctggaggtcctggagaccgtggaccc
cctggacctgttggaccccctggactcaccggacctgcgggagaacctggcagagagggc
acccctggatctgacgggcctcctggcagagacggctccactggaatcaagggtgatcgc
ggagccactggtcctctaggagctcctggagctcctggtgctccaggggccaacggccca
gtcggtcccactggcaaacagggagacagaggagagcctggtgcacaaggaccttctgga
ccctcgggaccagctggagccagagggatgcccggaccacaaggaccccgcggtgacaag
ggtgagggtggagagaacggtgagagaggacaaaagggacatagaggtttcactggtctg
cagggtctccccggacccccgggtcaagctggagaccagggagctactgggccttccgga
ccatctggacaaagaggaccacctggacctgttggccctgctggaaaggacggctccaac
ggtcagacaggacccatcggaccccctggaccccgaggtcgtggtggagacaccggcccc
tctggtccccctggaaaccccggaccccccggtcctcccggcccccctggtcctggcatc
gacatgtctgccttcgctggtctgggtcaagttgagaagtcccccgatcctctcaggtac
atgagggccgaccaggccgcgggaaacctccgtcaacacgacgccgaggtcgacgccact
ctcaagtctctcaacaaccagattgagaacatccgcagcccagagggatccaagaagaat
cctgctcgcacctgcagagatctgaagctctgccatcccgactggaagagcggggagtac
tggattgatcccaatcaaggctgcaccatagatgcaatcaaggtcttctgcaacatggag
accggggagtcctgcgtctaccccaaaccgtccagcattcctcgcaagaactggtggttc
agcaggagcaaggaccgcaagcacgtctggttcggagagacgatgaacggaggattccac
ttcagctacggtgacgaaagtctggcacctaacaccgctgccatccagatgactttcctg
aggctgctgtccaccgaggccgctcaaaacctcacctaccactgtaagaacagcgtggcc
tacatggacgcctcgacgggcaacctgaagaaggccgtgctgctgcagggctccaacgac
gtggagatcagagctgagggcaacagccgctttacttacagcgtcatggaagacggctgc
acgaaacacacaggacactggggcaagacggtgatcgagtacaggtcgcagaaaacctcc
cgtctgcccatcgtggacatcgcccctatggatatcggcggagctgaccaggagttcgga
gtcgacgtcgggccggtctgctacttgtaa
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