Cololabis saira (Pacific saury): 133448746
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Entry
133448746 CDS
T09849
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133448746 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csai03021
]
133448746 (smarcc2)
03036 Chromosome and associated proteins [BR:
csai03036
]
133448746 (smarcc2)
Transcription machinery [BR:
csai03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133448746 (smarcc2)
Chromosome and associated proteins [BR:
csai03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
133448746 (smarcc2)
PBAF complex
133448746 (smarcc2)
GBAF(ncBAF) complex
133448746 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
133448746
NCBI-ProteinID:
XP_061583563
LinkDB
All DBs
Position
8:28205912..28222588
Genome browser
AA seq
1050 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLPMKCFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLTRPVIYLSSDIEPKLLGKLKDIIKRHQGTVTEDKTSSSHVVVP
IPASLEEEEWVRPVMKRDKQVLLHWGYFPDSYDTWIPASEIEAAVEDAPSPEKPRKVHAK
WILDLDQYNEWMNEEDYEVGEGCPKRKRISAKTLTDEVTTPDERRDKKPSSAKKRKRSPS
PSPTPPPQESKKKNTKKGPTTPYTKSKRGQREEEQEDLSKDLDEASPVPASEEGNTAKTN
STKKDSDSTPVKGGTEMDEQEDESMETTGKEEEEGSPSVKGEPVKGSDLHEDNVTEQTHH
IIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTS
TACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLVP
LQPKTAQTPATQQMMSFPDKVKDKPSDLQNFGLRTDMYNKKTGSAKNKTAASSMRDWTEQ
ETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSSSLGPLAYQPI
PFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEEAAR
VSGRQDPLYGLEGSGIAGTGLEEGERPDESNDENKSDSQSNEEKREAKDSKEGATEEEEK
QAENGKKEEERGREAEGEREADKTEPEMGDGEKEKDGKEGTEEGQREGESEGERKAKVER
DVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELET
IMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQHQQHNQAGGPHSTQTP
SGPPQQGATASQPAPSTPAPPAAPSPAPASSSAPAPESQSHQGAHTSPPGPPGQAPPAHS
SSSTTPALNESSAPVPGETLHIAAPVPPPQ
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcggcccgaatgtaaaatattttgaagcatcagacacc
gtttcccagtttgataatgtccgcgtgtggctggggaagaattacaaaaagtacatccag
gccgagccccccaccaacaaatccctgtcgagccttgtggtccagctgctgcagttccag
gaggaagtgtttggtagacatgtcagcaaccccccactgactaaactgccgatgaagtgt
ttcctggacttcaagtcgggaggagctctctgccacatcctggctgctgcctacaagttc
aaaagtgaccaaggatggcgcaggtttgacttccagaatccatcgaggatggaccgaaat
gtggagatgttcatgaccattgaaaagtccttagttcaaaacaactgcctgaccagaccc
gtcatctacctgagttctgacattgaaccaaagctgcttggaaagttgaaagacatcatc
aaaagacatcagggcacagtgacagaggacaagacctcgagttcccatgtcgtggtgcct
attcctgccagtctggaggaagaggagtgggtgcgtcccgtgatgaagagagataagcaa
gttctgcttcactggggatattttcctgacagttatgacacctggatccctgccagtgag
attgaggcagcagtggaggatgctccaagtccagaaaagcccagaaaggtccatgcgaag
tggattttagacctggaccagtacaatgagtggatgaacgaggaggactatgaggtgggt
gagggctgtcccaagagaaagaggatctctgccaagactctgacagatgaggtgacaact
ccagatgagcggagggacaaaaaacccagcagtgccaagaagaggaagcgctcgccatca
ccctcccccacccctccacctcaagagagcaagaagaagaacaccaaaaaagggccaacg
acgccatacaccaagtctaaacggggtcagagggaggaggagcaggaggacctatccaag
gacttggatgaagcgtctcctgttccagcgtctgaagagggaaatacagcaaagacaaat
agcaccaaaaaggactcagattcaactccagtcaaaggagggacagaaatggatgagcaa
gaggacgaatcaatggaaacgacaggaaaggaagaggaggaaggctctccgagtgtgaag
ggggaaccagtgaagggctcagaccttcacgaggacaacgtgactgagcaaacacaccac
atcatcatacccagctatgctgcctggttcgactacaacagcgttcatgccatagagcgc
agagctctaccagagtttttcaatgggaaaaacaaatctaaaacgcctgaaatttacctg
gcatacagaaacttcatgattgacacctacagactgaaccctcaggagtacctgacctcc
accgcctgccgtaggaacctggcaggagatgtttgtgccataatgagggtccacgcattc
ctggaacagtggggactgatcaactaccaggtggactccgagagccggcccacacccatg
ggtcccccgcccacctctcatttccacgtcctggcagatactccctccagtctggtgcca
ctgcagcccaagacagcccagacccctgccacccagcagatgatgtcattcccagataag
gtgaaggacaagccatcagatctgcaaaactttggtctgcggactgacatgtacaacaaa
aagaccggatctgcaaagaacaagactgcagcaagctccatgagagactggacagagcaa
gaaacactactattacttgagggcctggagatgtacaaggacgactggaacaaagtgtct
gaacatgtgggcagccgtacgcaggatgagtgcatcttgcatttcctgcggttgcccatt
gaagacccatacttggaggacagttcctcgtctctgggaccactagcgtaccagccaata
cctttcagccaagcaggaaaccctgtcatgagcacagtggccttccttgcttctgtagtc
gacccacgagtggcctctgctgcagccaagtctgctcttgaggagttttcgcgtatgaag
gaggaggtacctgccgcgcttgttgaggctcatgtgcggcgggtggaggaagcagcgagg
gtcagcggccgtcaggatcctctgtacggcctggagggaagtggtatcgctggcaccggg
ctggaggagggagagagacctgatgaaagcaatgatgaaaataagagtgatagtcaatca
aatgaggagaagagagaagctaaggacagcaaagagggagcgacggaggaagaggagaag
caggcggagaatgggaagaaggaggaggaaagaggacgagaagcagagggagagagggag
gcagacaagacagagcctgaaatgggtgatggggagaaggagaaggatggaaaagaggga
acagaagaaggacaaagagagggcgagagtgaaggagaaaggaaggctaaggtggaacgt
gatgtcggggaaggaaacctggcaactgctgctgcctccgccttagcggctgctgctgtc
aaagccaagcatttggcagcagtggaagagaggaagatcaaatctctcgtcgctctgctc
gtggagactcaaatgaagaagcttgagataaaactgcgacactttgaagaactggaaacc
atcatggacagagagagggaggcgctggagtaccagcggcagcagctacttgccgaccgt
cagtccttccacatggagcagctgaagtacgctgagatgagggctcgtcagcagcacttc
cagcagattcaacaccagcagcacaaccaagcggggggtcctcactccacccagacaccc
tcaggtccgccacagcaaggagcgactgcaagtcaaccagctcccagcacaccagcacca
ccggcagcgcccagtcccgcaccagcatcctcttcagccccagctcccgagtcccaatca
catcaaggcgctcatacctcgccgcccggccccccaggccaggccccgcctgctcactcc
agctccagcactacacctgcactcaatgaatcgagtgcccctgttcccggagagacactc
cacattgcagcacccgtccctccaccacagtga
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