Cololabis saira (Pacific saury): 133449016
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Entry
133449016 CDS
T09849
Name
(RefSeq) RNA-binding protein 39-like
KO
K13091
RNA-binding protein 23/39
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csai03041
]
133449016
Spliceosome [BR:
csai03041
]
Common components
Common spliceosomal components
General mRNP proteins
133449016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RBD_DEAH11
RRM_10
RRM_7
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
133449016
NCBI-ProteinID:
XP_061584078
LinkDB
All DBs
Position
8:complement(45641084..45670690)
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AA seq
489 aa
AA seq
DB search
MADDLDIEAMLEAPYRKEDAKNQSPDGPEEHGKRKKRSRSRDKRRSRSRERRGSRSRDKR
RSRSRERRRSRERGGRYKDHYKHRRWSKSKSPVRKEKSPIRLPIDNLTPEERDARTVFCM
QLAARIRPRDLEDFFSAVGKVRDVRMISDRNSRRSKGIAYIEFVEASSVPLAIGLTGQRL
LGVPIIVQASQAEKNRAAAAAAANNLQKGMSGPMRLYVGSLHFNITEEMLRGIFEPFGRI
ENIQLMMDSETARSKGYGFITFSEAECAKKALEQLNGFELAGRPMKVGHVTERTDPSMSS
SFLDNDELERSGIDLGTTGRLQLMARLAEGTGMQIPQATQQALQMSGAIAIGAMAAVSAA
MNPAMNMNSGAMNLPSQPLATHCFQLSNMFNPSSEDAPGWEMDIQHDVIEECNKHGGVVH
IYVDKNSPEGNVYVKCPSIPAAMAAVNALHGRFFGGKMITAAYVPLPTYHKLFPESATAT
ELLPPPARR
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgacctggacatcgaggcgatgctggaggctccgtacaggaaggaggacgcc
aagaaccagagcccagatggaccggaggagcacggcaaaaggaagaagcgcagccgcagc
cgggacaagagaaggagccggagtcgagagcgcagaggcagtcgcagcagagacaaacgg
agaagtcgcagccgggagcgccgccgcagcagagagaggggcggccgctacaaagaccac
tacaagcaccgccggtggtccaagagtaagagtcctgtcaggaaggagaagagtcccatc
aggctccccatagacaacctgaccccggaggagcgggacgcccggaccgtgttctgcatg
cagctggcggcccggatccgcccgcgggacctggaggacttcttctccgccgtggggaag
gtccgggacgtgaggatgatctcggacaggaactcccgccggtccaagggcatcgcctac
atcgagtttgtggaggccagctccgttcccctggccatcgggctgacggggcagaggctg
ctgggagtccccatcatcgtccaggcctcccaggcagagaagaaccgggcggcggctgcg
gcagcagccaacaacctgcagaagggcatgtctggacccatgaggctgtacgtgggctca
ctgcacttcaacatcacagaggagatgctgcggggaatcttcgagccgtttggacggatt
gaaaacatccagctgatgatggacagcgaaacggcacgctccaaaggctacggcttcatc
accttctcagaggcggagtgcgctaagaaagccctggagcagctgaacggctttgagctg
gccgggcggcccatgaaggtggggcacgtgacggagcggaccgacccctccatgtcctcg
tccttcctggacaacgacgagctggagcgctccggcatcgacctgggcaccaccggccgc
ctgcagctgatggcccggctggccgagggtaccggcatgcagatccctcaggccactcaa
caggctctgcagatgagcggagccatcgccatcggagccatggctgctgtgtcagctgcc
atgaatccagccatgaacatgaactctggagctatgaatcttccctctcagccgctggca
acacactgcttccagctgtccaacatgttcaaccccagcagtgaggatgctcctgggtgg
gagatggacatccagcatgatgtcattgaggagtgtaacaaacacggcggtgtcgtgcac
atctacgtcgacaagaactcaccagagggaaacgtctacgtcaagtgtccctcgatcccg
gctgccatggctgccgtcaacgccctgcacgggcgcttctttggcggtaaaatgatcacg
gcggcctacgtccctctccccacctaccacaagctcttcccggagtctgccacggccacg
gagctgctgcccccgcccgcccgacggtga
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