Cololabis saira (Pacific saury): 133449589
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Entry
133449589 CDS
T09849
Symbol
ddx27
Name
(RefSeq) probable ATP-dependent RNA helicase DDX27 isoform X1
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csai03041
]
133449589 (ddx27)
03009 Ribosome biogenesis [BR:
csai03009
]
133449589 (ddx27)
Enzymes [BR:
csai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133449589 (ddx27)
Spliceosome [BR:
csai03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
133449589 (ddx27)
Ribosome biogenesis [BR:
csai03009
]
Eukaryotic type
Pre-60S particles
Helicases
133449589 (ddx27)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
SNF2-rel_dom
AAA_22
Zip
PRK
Motif
Other DBs
NCBI-GeneID:
133449589
NCBI-ProteinID:
XP_061584742
LinkDB
All DBs
Position
8:complement(46162101..46182910)
Genome browser
AA seq
765 aa
AA seq
DB search
MLEQLGLIGTIQDEDQSPEEPDTESDQEEGPIILNRKKKLGSHGSKYFNCDFEFGEKDGQ
SRAKDWAMADVMKQLKKKRTITTLDQKIDKIRKKRKAEEKSPQDDGSSEKKEEGEEEEKV
TAVADGEEDDDDKEEEEEEDDEDDEEEEEEGEFGSSDEEVLTKSDTLREKERRGKKRNAA
EEGPEAFYEDASQYNDKLTFDNMNLSRPILKAVTAMGFKQPTPIQKACVPVGLMGRDLCA
CAATGTGKTAAFVLPVLERLVYKPKTSQVTRVLVLVPTRELGIQVHTVARQLAQFTSITT
CLAVGGLDLKSQEAALRAGPDVLIATPGRLIDHLHNTPSFELTHIEILILDEADRMLDEY
FEEQMKEIIRMCSYNRQTMLFSATMTEEVKDLAAVSLKQPVKIFVNSNTDVAPFLRQEFV
RIRPHREGDREAVVAALLTRTFQDHVMLFTQTRKQAHRLHILLGLMGLKVGELHGELSQM
QRLENLRRFKDEQIDILVATDVAARGLDIDGVKTVINFTMPSTVKHYVHRVGRTARAGRS
GRSVSLVGESERKTLKEVVKSARAAVKARVLPPEVILKFRDLITKLEKDVDAVTRLEREE
RELAASEAKLSVAQKRLEGSASCESQRVWFQTQQERKQSRMSKALQDFDLALRGTKKRQK
FVKDGGRKKELTPEERAEFEILKAQMFAERSAKRERRPKRARAMAEDEAPAPAANKKPAK
GGKKSVFDQELTNTSKKALKQYRAGPSFEDRKRLGLNRKRPGGSR
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgctggaacagctgggtctgatcgggacgatccaggacgaggaccagagtccggaggag
cccgacaccgagtccgaccaggaggaggggccgatcatcctgaacaggaagaaaaagctg
gggagtcatgggtcaaaatactttaactgtgactttgagtttggtgagaaagacgggcag
agccgggccaaagactgggccatggccgacgtcatgaagcagctcaagaagaagagaacc
atcaccactctggaccagaagatcgacaagatcaggaagaagagaaaagctgaggagaag
tctccccaggacgacggttcctcggagaaaaaagaggagggggaagaggaggagaaggtg
acagctgttgctgatggagaggaggatgatgatgataaggaggaggaggaagaagaagat
gatgaggatgatgaggaggaggaggaggagggggagtttggctccagcgatgaggaagtt
ctcaccaaatcagacaccctgagagagaaggagcggcgggggaagaagaggaacgcagcg
gaggagggtccagaagctttctacgaagacgcatcccagtacaacgataagctgaccttc
gacaacatgaacctgtccagacccatcctgaaggccgtcacagccatgggcttcaagcag
cccacccccatccagaaggcctgcgtcccggtgggcctgatgggccgggacctgtgtgcc
tgcgctgctactgggacagggaagacggcagccttcgtgctgcccgtgctggagcgtctc
gtctacaaacccaagacgtcccaggtgacccgggtcctggttctggttcccaccagggag
ctggggatccaggtccataccgtggcccgccagctggcccagttcacctccatcaccacc
tgcctggccgtcgggggtctggacctgaagtcccaggaggcggcgctgagggcggggcca
gacgtcctgatcgccacccccgggcggctgatcgatcacctgcacaacacgcccagcttc
gagctgacgcacatcgagatcctgatcctggacgaggccgacagaatgttggacgagtac
tttgaggagcagatgaaggagatcatcaggatgtgttcctacaacagacagaccatgctg
ttctctgccaccatgacggaggaggtcaaggacctggccgccgtgtcgctgaagcagccg
gtcaagatcttcgtcaacagcaacacagacgtggctccgttcctgcggcaggagttcgtc
cggatccgaccgcaccgggaaggagacagggaggccgtggtggctgcgctgctgacccgg
accttccaggaccacgtgatgctgttcacccagaccaggaaacaggcccaccggctgcac
atcctgctgggcctgatgggcctgaaggtgggagagctgcacggagagctgagccagatg
cagcggctggagaacctcaggcgttttaaagatgaacagatcgatatcttggtggcgaca
gatgtagcagccagagggttggatattgatggagtcaaaacggtgataaacttcaccatg
ccatccacggtcaaacactacgtccaccgcgtgggccggacggccagagccggccggtcg
ggccgctccgtgtcgctggtgggagagtctgagaggaagacgctgaaggaggtggtgaag
tcggcccgggccgccgtgaaggcccgcgtcctgcccccagaggtcatcctgaagttcaga
gatctgataaccaaactggagaaggatgtggacgccgtgacgaggctggagagagaagag
agagagctggcggcctccgaggccaagttgagcgtggctcagaagcgactggaaggctcc
gcctcttgtgaatcacaaagagtttggtttcagactcaacaggaaagaaaacaaagtcgc
atgtccaaagctctgcaggacttcgatctggctctgagaggaaccaagaagaggcagaag
ttcgtcaaggacggcgggaggaagaaagagctgacgcccgaggagcgcgctgagttcgag
atcctgaaagcccagatgtttgctgagcggtcagcaaagagagagagacgaccgaagagg
gcgagagccatggctgaggacgaggcccccgctccagcagccaataagaaaccagctaaa
ggaggcaagaagtctgtgtttgatcaggagctgaccaacaccagcaagaaggccctgaaa
cagtaccgagctggaccgtccttcgaggacaggaagcggctgggattgaacaggaagcgt
ccaggtggctccaggtga
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